Analysis of interatomic Contacts of Structural Units in PDB entry:
1V6Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V6Z entry

There are 2 chains in PDB entry 1V6Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2ARG 228
B
 HIS 4ARG 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1V6Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 12Right-handed 310
Helix 2
2
A
16 25Right-handed alpha
Helix 3
3
A
83 95Right-handed alpha
Helix 4
4
A
114 132Right-handed alpha
Helix 5
5
A
147 149Right-handed 310
Helix 6
6
A
165 170Right-handed alpha
Helix 7
7
A
187 198Right-handed alpha
Helix 8
8
A
210 223Right-handed alpha
Helix 9
9
A
224 227Right-handed 310
Helix 10
10
B
16 25Right-handed alpha
Helix 11
11
B
83 95Right-handed alpha
Helix 12
12
B
114 132Right-handed alpha
Helix 13
13
B
147 149Right-handed 310
Helix 14
14
B
165 170Right-handed alpha
Helix 15
15
B
187 197Right-handed alpha
Helix 16
16
B
210 223Right-handed alpha
Helix 17
17
B
224 227Right-handed 310
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There are 6 sheets in PDB entry 1V6Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
34 38parallel
Strand 3
A
43 50anti-parallel
Strand 4
A
56 63anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
99 104parallel
Strand 3
A
144 145parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 140first strand
Strand 2
A
99 104parallel
Strand 3
A
73 78parallel
Strand 4
A
176 180parallel
Strand 5
A
155 158parallel
Strand 6
A
199 202parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
34 38parallel
Strand 3
B
43 50anti-parallel
Strand 4
B
56 62anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
99 104parallel
Strand 3
B
144 145parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 140first strand
Strand 2
B
99 104parallel
Strand 3
B
73 78parallel
Strand 4
B
176 180parallel
Strand 5
B
155 158parallel
Strand 6
B
199 202parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il