Analysis of interatomic Contacts of Structural Units in PDB entry:
1V72


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V72 entry

There is 1 chain in PDB entry 1V72 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 6ALA 350
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 1V72. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 18Right-handed 310
Helix 2
2
A
21 31Right-handed alpha
Helix 3
3
A
42 57Right-handed alpha
Helix 4
4
A
67 78Right-handed alpha
Helix 5
5
A
92 97Right-handed alpha
Helix 6
6
A
100 106Right-handed alpha
Helix 7
7
A
116 120Right-handed 310
Helix 8
8
A
122 130Right-handed alpha
Helix 9
9
A
158 172Right-handed alpha
Helix 10
10
A
182 191Right-handed alpha
Helix 11
11
A
198 202Right-handed 310
Helix 12
12
A
210 214Right-handed 310
Helix 13
13
A
225 227Right-handed 310
Helix 14
14
A
228 239Right-handed alpha
Helix 15
15
A
246 257Right-handed alpha
Helix 16
16
A
260 281Right-handed alpha
Helix 17
17
A
302 312Right-handed alpha
Helix 18
18
A
335 349Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1V72. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 65first strand
Strand 2
A
219 223anti-parallel
Strand 3
A
205 208anti-parallel
Strand 4
A
175 180parallel
Strand 5
A
141 148parallel
Strand 6
A
84 88parallel
Strand 7
A
110 113parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 289first strand
Strand 2
A
296 301anti-parallel
Strand 3
A
325 329anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il