Analysis of interatomic Contacts of Structural Units in PDB entry:
1V7C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1V7C entry

There are 4 chains in PDB entry 1V7C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 351
B	MET 1	LEU 351
C	MET 1	LEU 351
D	MET 1	LEU 351

There are 73 helices in PDB entry 1V7C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	4	9	Right-handed alpha
Helix 2	2	A	10	13	Right-handed 310
Helix 3	3	A	37	42	Right-handed alpha
Helix 4	4	A	53	55	Right-handed 310
Helix 5	5	A	60	75	Right-handed alpha
Helix 6	6	A	86	100	Right-handed alpha
Helix 7	7	A	113	123	Right-handed alpha
Helix 8	8	A	133	148	Right-handed alpha
Helix 9	9	A	157	165	Right-handed alpha
Helix 10	10	A	165	176	Right-handed alpha
Helix 11	11	A	189	205	Right-handed alpha
Helix 12	12	A	223	228	Right-handed alpha
Helix 13	13	A	238	242	Right-handed 310
Helix 14	14	A	248	260	Right-handed alpha
Helix 15	15	A	267	282	Right-handed alpha
Helix 16	16	A	287	303	Right-handed alpha
Helix 17	17	A	319	330	Right-handed 310
Helix 18	18	A	340	348	Right-handed alpha
Helix 19	19	B	4	9	Right-handed alpha
Helix 20	20	B	10	13	Right-handed 310
Helix 21	21	B	37	42	Right-handed alpha
Helix 22	22	B	53	55	Right-handed 310
Helix 23	23	B	60	75	Right-handed alpha
Helix 24	24	B	86	100	Right-handed alpha
Helix 25	25	B	113	123	Right-handed alpha
Helix 26	26	B	133	148	Right-handed alpha
Helix 27	27	B	157	165	Right-handed alpha
Helix 28	28	B	165	176	Right-handed alpha
Helix 29	29	B	189	205	Right-handed alpha
Helix 30	30	B	223	228	Right-handed alpha
Helix 31	31	B	238	242	Right-handed 310
Helix 32	32	B	248	260	Right-handed alpha
Helix 33	33	B	267	281	Right-handed alpha
Helix 34	34	B	287	303	Right-handed alpha
Helix 35	35	B	319	330	Right-handed 310
Helix 36	36	B	340	348	Right-handed alpha
Helix 37	37	C	4	9	Right-handed alpha
Helix 38	38	C	10	13	Right-handed 310
Helix 39	39	C	37	42	Right-handed alpha
Helix 40	40	C	53	55	Right-handed 310
Helix 41	41	C	60	75	Right-handed alpha
Helix 42	42	C	86	100	Right-handed alpha
Helix 43	43	C	113	123	Right-handed alpha
Helix 44	44	C	133	148	Right-handed alpha
Helix 45	45	C	157	165	Right-handed alpha
Helix 46	46	C	165	176	Right-handed alpha
Helix 47	47	C	189	205	Right-handed alpha
Helix 48	48	C	223	228	Right-handed alpha
Helix 49	49	C	238	242	Right-handed 310
Helix 50	50	C	248	260	Right-handed alpha
Helix 51	51	C	267	281	Right-handed alpha
Helix 52	52	C	287	303	Right-handed alpha
Helix 53	53	C	319	325	Right-handed 310
Helix 54	54	C	326	331	Right-handed alpha
Helix 55	55	C	340	348	Right-handed alpha
Helix 56	56	D	4	9	Right-handed alpha
Helix 57	57	D	10	13	Right-handed 310
Helix 58	58	D	37	42	Right-handed alpha
Helix 59	59	D	53	55	Right-handed 310
Helix 60	60	D	60	75	Right-handed alpha
Helix 61	61	D	86	100	Right-handed alpha
Helix 62	62	D	113	123	Right-handed alpha
Helix 63	63	D	133	148	Right-handed alpha
Helix 64	64	D	157	165	Right-handed alpha
Helix 65	65	D	165	176	Right-handed alpha
Helix 66	66	D	189	205	Right-handed alpha
Helix 67	67	D	223	228	Right-handed alpha
Helix 68	68	D	238	242	Right-handed 310
Helix 69	69	D	248	260	Right-handed alpha
Helix 70	70	D	267	281	Right-handed alpha
Helix 71	71	D	287	303	Right-handed alpha
Helix 72	72	D	319	330	Right-handed 310
Helix 73	73	D	340	348	Right-handed alpha

There are 8 sheets in PDB entry 1V7C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	45	51	anti-parallel
Strand 3	A	310	316	parallel
Strand 4	A	181	185	parallel
Strand 5	A	213	219	parallel
Strand 6	A	262	266	parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	152	first strand
Strand 2	A	79	83	parallel
Strand 3	A	102	108	parallel
Strand 4	A	126	131	parallel
Strand 5	B	337	338	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	337	338	first strand
Strand 2	B	126	131	parallel
Strand 3	B	102	108	parallel
Strand 4	B	79	83	parallel
Strand 5	B	151	152	parallel

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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	46	51	anti-parallel
Strand 3	B	311	316	parallel
Strand 4	B	181	185	parallel
Strand 5	B	213	219	parallel
Strand 6	B	262	266	parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	33	first strand
Strand 2	C	46	51	anti-parallel
Strand 3	C	311	316	parallel
Strand 4	C	181	185	parallel
Strand 5	C	213	219	parallel
Strand 6	C	262	266	parallel

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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	126	130	first strand
Strand 2	C	102	108	parallel
Strand 3	C	79	83	parallel
Strand 4	C	151	152	parallel

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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	337	338	first strand
Strand 2	D	126	131	parallel
Strand 3	D	102	108	parallel
Strand 4	D	79	83	parallel
Strand 5	D	151	152	parallel

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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	33	first strand
Strand 2	D	46	51	anti-parallel
Strand 3	D	311	316	parallel
Strand 4	D	181	185	parallel
Strand 5	D	213	219	parallel
Strand 6	D	262	266	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1V7C

Analysis of interatomic Contacts of Structural Units in PDB entry:
1V7C