Analysis of interatomic Contacts of Structural Units in PDB entry:
1V7P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V7P entry

There are 3 chains in PDB entry 1V7P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1VAL 134
B
 CYS 1ALA 127
C
 LEU 143ILE 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 1V7P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 36Right-handed alpha
Helix 2
2
A
46 57Right-handed alpha
Helix 3
3
A
58 63Right-handed 310
Helix 4
4
A
110 112Right-handed 310
Helix 5
5
B
21 33Right-handed alpha
Helix 6
6
B
43 58Right-handed alpha
Helix 7
7
C
158 172Right-handed alpha
Helix 8
8
C
202 213Right-handed alpha
Helix 9
9
C
222 234Right-handed alpha
Helix 10
10
C
236 240Right-handed 310
Helix 11
11
C
259 261Right-handed 310
Helix 12
12
C
262 273Right-handed alpha
Helix 13
13
C
283 289Right-handed alpha
Helix 14
14
C
293 304Right-handed alpha
Helix 15
15
C
307 311Right-handed alpha
Helix 16
16
C
318 323Right-handed 310
Helix 17
17
C
324 334Right-handed alpha
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There are 5 sheets in PDB entry 1V7P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 11first strand
Strand 2
A
14 23anti-parallel
Strand 3
A
125 132anti-parallel
Strand 4
A
40 41anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 119first strand
Strand 2
A
104 108anti-parallel
Strand 3
A
67 73anti-parallel
Strand 4
B
77 78anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
11 20anti-parallel
Strand 3
B
116 123anti-parallel
Strand 4
B
37 38anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
11 20anti-parallel
Strand 3
B
116 123anti-parallel
Strand 4
B
62 68parallel
Strand 5
B
94 100anti-parallel
Strand 6
B
105 111anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
191 195first strand
Strand 2
C
180 187anti-parallel
Strand 3
C
144 151parallel
Strand 4
C
246 253parallel
Strand 5
C
275 282parallel
Strand 6
C
312 315parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il