Analysis of interatomic Contacts of Structural Units in PDB entry:
1V83


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V83 entry

There are 2 chains in PDB entry 1V83 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 83ILE 334
B
 ALA 82ILE 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1V83. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
97 110Right-handed alpha
Helix 2
2
A
127 138Right-handed alpha
Helix 3
3
A
149 154Right-handed alpha
Helix 4
4
A
166 181Right-handed alpha
Helix 5
5
A
201 210Right-handed alpha
Helix 6
6
A
254 256Right-handed 310
Helix 7
7
A
262 268Right-handed alpha
Helix 8
8
A
282 289Right-handed alpha
Helix 9
9
A
293 295Right-handed 310
Helix 10
10
A
300 305Right-handed alpha
Helix 11
11
A
319 323Right-handed 310
Helix 12
12
B
97 110Right-handed alpha
Helix 13
13
B
127 138Right-handed alpha
Helix 14
14
B
166 181Right-handed alpha
Helix 15
15
B
201 210Right-handed alpha
Helix 16
16
B
254 256Right-handed 310
Helix 17
17
B
262 268Right-handed alpha
Helix 18
18
B
282 292Right-handed alpha
Helix 19
19
B
293 295Right-handed 310
Helix 20
20
B
300 305Right-handed alpha
Helix 21
21
B
319 323Right-handed 310
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There are 6 sheets in PDB entry 1V83. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 145first strand
Strand 2
A
115 121parallel
Strand 3
A
85 92parallel
Strand 4
A
189 193parallel
Strand 5
A
258 261anti-parallel
Strand 6
A
214 216anti-parallel
Strand 7
A
297 299parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 200first strand
Strand 2
A
309 310anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
227 232anti-parallel
Strand 3
A
238 242anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 145first strand
Strand 2
B
115 121parallel
Strand 3
B
85 92parallel
Strand 4
B
189 193parallel
Strand 5
B
258 261anti-parallel
Strand 6
B
214 216anti-parallel
Strand 7
B
297 299parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
199 200first strand
Strand 2
B
309 310anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
219 220first strand
Strand 2
B
227 232anti-parallel
Strand 3
B
238 242anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il