Analysis of interatomic Contacts of Structural Units in PDB entry:
1V8B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V8B entry

There are 4 chains in PDB entry 1V8B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 4TYR 479
B
 ASN 4TYR 479
C
 ASN 4TYR 479
D
 ASN 4TYR 479
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 94 helices in PDB entry 1V8B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 12Right-handed 310
Helix 2
2
A
13 25Right-handed alpha
Helix 3
3
A
28 38Right-handed alpha
Helix 4
4
A
56 69Right-handed alpha
Helix 5
5
A
84 92Right-handed alpha
Helix 6
6
A
106 119Right-handed alpha
Helix 7
7
A
136 156Right-handed alpha
Helix 8
8
A
160 164Right-handed 310
Helix 9
9
A
166 181Right-handed alpha
Helix 10
10
A
185 192Right-handed alpha
Helix 11
11
A
201 214Right-handed alpha
Helix 12
12
A
227 232Right-handed alpha
Helix 13
13
A
233 252Right-handed alpha
Helix 14
14
A
266 280Right-handed alpha
Helix 15
15
A
289 298Right-handed alpha
Helix 16
16
A
305 310Right-handed alpha
Helix 17
17
A
327 332Right-handed alpha
Helix 18
18
A
351 357Right-handed alpha
Helix 19
19
A
386 388Right-handed 310
Helix 20
20
A
389 394Right-handed alpha
Helix 21
21
A
399 420Right-handed alpha
Helix 22
22
A
434 447Right-handed alpha
Helix 23
23
A
448 450Right-handed 310
Helix 24
24
A
457 465Right-handed alpha
Helix 25
25
B
10 12Right-handed 310
Helix 26
26
B
13 25Right-handed alpha
Helix 27
27
B
28 38Right-handed alpha
Helix 28
28
B
56 69Right-handed alpha
Helix 29
29
B
84 92Right-handed alpha
Helix 30
30
B
106 119Right-handed alpha
Helix 31
31
B
136 156Right-handed alpha
Helix 32
32
B
160 164Right-handed 310
Helix 33
33
B
166 181Right-handed alpha
Helix 34
34
B
185 192Right-handed alpha
Helix 35
35
B
201 214Right-handed alpha
Helix 36
36
B
227 232Right-handed alpha
Helix 37
37
B
233 252Right-handed alpha
Helix 38
38
B
266 280Right-handed alpha
Helix 39
39
B
289 298Right-handed alpha
Helix 40
40
B
305 310Right-handed alpha
Helix 41
41
B
327 332Right-handed alpha
Helix 42
42
B
351 357Right-handed alpha
Helix 43
43
B
386 388Right-handed 310
Helix 44
44
B
389 394Right-handed alpha
Helix 45
45
B
399 420Right-handed alpha
Helix 46
46
B
434 446Right-handed alpha
Helix 47
47
B
457 465Right-handed alpha
Helix 48
48
C
10 12Right-handed 310
Helix 49
49
C
13 25Right-handed alpha
Helix 50
50
C
28 38Right-handed alpha
Helix 51
51
C
56 69Right-handed alpha
Helix 52
52
C
84 92Right-handed alpha
Helix 53
53
C
106 119Right-handed alpha
Helix 54
54
C
136 156Right-handed alpha
Helix 55
55
C
160 164Right-handed 310
Helix 56
56
C
166 181Right-handed alpha
Helix 57
57
C
185 192Right-handed alpha
Helix 58
58
C
201 214Right-handed alpha
Helix 59
59
C
227 232Right-handed alpha
Helix 60
60
C
233 252Right-handed alpha
Helix 61
61
C
266 280Right-handed alpha
Helix 62
62
C
289 298Right-handed alpha
Helix 63
63
C
305 310Right-handed alpha
Helix 64
64
C
327 332Right-handed alpha
Helix 65
65
C
351 357Right-handed alpha
Helix 66
66
C
386 388Right-handed 310
Helix 67
67
C
389 394Right-handed alpha
Helix 68
68
C
399 420Right-handed alpha
Helix 69
69
C
434 446Right-handed alpha
Helix 70
70
C
457 465Right-handed alpha
Helix 71
71
D
10 12Right-handed 310
Helix 72
72
D
13 25Right-handed alpha
Helix 73
73
D
28 38Right-handed alpha
Helix 74
74
D
56 69Right-handed alpha
Helix 75
75
D
84 92Right-handed alpha
Helix 76
76
D
106 119Right-handed alpha
Helix 77
77
D
136 156Right-handed alpha
Helix 78
78
D
160 164Right-handed 310
Helix 79
79
D
166 181Right-handed alpha
Helix 80
80
D
185 192Right-handed alpha
Helix 81
81
D
201 214Right-handed alpha
Helix 82
82
D
227 232Right-handed alpha
Helix 83
83
D
233 252Right-handed alpha
Helix 84
84
D
266 280Right-handed alpha
Helix 85
85
D
289 298Right-handed alpha
Helix 86
86
D
305 310Right-handed alpha
Helix 87
87
D
327 332Right-handed alpha
Helix 88
88
D
351 357Right-handed alpha
Helix 89
89
D
386 388Right-handed 310
Helix 90
90
D
389 394Right-handed alpha
Helix 91
91
D
399 420Right-handed alpha
Helix 92
92
D
434 446Right-handed alpha
Helix 93
93
D
447 450Right-handed 310
Helix 94
94
D
457 465Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 1V8B. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
72 76parallel
Strand 3
A
48 52parallel
Strand 4
A
130 133parallel
Strand 5
A
196 199parallel
Strand 6
A
220 223parallel
Strand 7
A
430 431parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
282 286parallel
Strand 3
A
259 263parallel
Strand 4
A
315 318parallel
Strand 5
A
339 342parallel
Strand 6
A
380 384parallel
Strand 7
A
370 374anti-parallel
Strand 8
A
362 367anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 100first strand
Strand 2
B
72 76parallel
Strand 3
B
48 52parallel
Strand 4
B
130 133parallel
Strand 5
B
196 199parallel
Strand 6
B
220 223parallel
Strand 7
B
430 431parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 303first strand
Strand 2
B
282 286parallel
Strand 3
B
259 263parallel
Strand 4
B
315 318parallel
Strand 5
B
339 342parallel
Strand 6
B
380 384parallel
Strand 7
B
370 374anti-parallel
Strand 8
B
362 367anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 100first strand
Strand 2
C
72 76parallel
Strand 3
C
48 52parallel
Strand 4
C
130 133parallel
Strand 5
C
196 199parallel
Strand 6
C
220 223parallel
Strand 7
C
430 431parallel
Back to list of sheets
Back to top of page

There are 8 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
302 303first strand
Strand 2
C
282 286parallel
Strand 3
C
259 263parallel
Strand 4
C
315 318parallel
Strand 5
C
339 342parallel
Strand 6
C
380 384parallel
Strand 7
C
370 374anti-parallel
Strand 8
C
362 367anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
97 100first strand
Strand 2
D
72 76parallel
Strand 3
D
48 52parallel
Strand 4
D
130 133parallel
Strand 5
D
196 199parallel
Strand 6
D
220 223parallel
Strand 7
D
430 431parallel
Back to list of sheets
Back to top of page

There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
302 303first strand
Strand 2
D
282 286parallel
Strand 3
D
259 263parallel
Strand 4
D
315 318parallel
Strand 5
D
339 342parallel
Strand 6
D
380 384parallel
Strand 7
D
370 374anti-parallel
Strand 8
D
362 367anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il