Analysis of interatomic Contacts of Structural Units in PDB entry:
1V8C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V8C entry

There are 4 chains in PDB entry 1V8C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1ARG 165
B
 PRO 1SER 164
C
 PRO 1ARG 165
D
 PRO 1ARG 165
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1V8C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 14Right-handed alpha
Helix 2
2
A
24 36Right-handed alpha
Helix 3
3
A
39 43Right-handed alpha
Helix 4
4
A
63 65Right-handed 310
Helix 5
5
A
66 70Right-handed 310
Helix 6
6
A
97 108Right-handed alpha
Helix 7
7
A
151 164Right-handed alpha
Helix 8
8
B
7 14Right-handed alpha
Helix 9
9
B
24 36Right-handed alpha
Helix 10
10
B
39 43Right-handed alpha
Helix 11
11
B
63 65Right-handed 310
Helix 12
12
B
66 70Right-handed 310
Helix 13
13
B
97 108Right-handed alpha
Helix 14
14
B
151 164Right-handed alpha
Helix 15
15
C
7 14Right-handed alpha
Helix 16
16
C
24 36Right-handed alpha
Helix 17
17
C
39 43Right-handed alpha
Helix 18
18
C
63 65Right-handed 310
Helix 19
19
C
66 70Right-handed 310
Helix 20
20
C
97 108Right-handed alpha
Helix 21
21
C
151 165Right-handed alpha
Helix 22
22
D
7 14Right-handed alpha
Helix 23
23
D
24 36Right-handed alpha
Helix 24
24
D
39 43Right-handed alpha
Helix 25
25
D
63 65Right-handed 310
Helix 26
26
D
66 70Right-handed 310
Helix 27
27
D
97 108Right-handed alpha
Helix 28
28
D
151 165Right-handed alpha
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There are 12 sheets in PDB entry 1V8C. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 19first strand
Strand 2
A
2 5anti-parallel
Strand 3
A
77 81parallel
Strand 4
A
54 57anti-parallel
Strand 5
A
60 61anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
48 49anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 94first strand
Strand 2
A
138 149anti-parallel
Strand 3
A
123 135anti-parallel
Strand 4
A
117 120anti-parallel
Strand 5
A
111 114anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 19first strand
Strand 2
B
2 5anti-parallel
Strand 3
B
77 81parallel
Strand 4
B
54 57anti-parallel
Strand 5
B
60 61anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
48 49anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 94first strand
Strand 2
B
138 148anti-parallel
Strand 3
B
123 135anti-parallel
Strand 4
B
117 120anti-parallel
Strand 5
B
111 114anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
17 19first strand
Strand 2
C
2 5anti-parallel
Strand 3
C
77 81parallel
Strand 4
C
54 57anti-parallel
Strand 5
C
60 61anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 45first strand
Strand 2
C
48 49anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 94first strand
Strand 2
C
138 148anti-parallel
Strand 3
C
123 135anti-parallel
Strand 4
C
117 120anti-parallel
Strand 5
C
111 114anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
17 19first strand
Strand 2
D
2 5anti-parallel
Strand 3
D
77 81parallel
Strand 4
D
54 57anti-parallel
Strand 5
D
60 61anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
44 45first strand
Strand 2
D
48 49anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
88 94first strand
Strand 2
D
138 148anti-parallel
Strand 3
D
123 135anti-parallel
Strand 4
D
117 120anti-parallel
Strand 5
D
111 114anti-parallel
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