Analysis of interatomic Contacts of Structural Units in PDB entry:
1V8D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V8D entry

There are 3 chains in PDB entry 1V8D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 40PRO 232
B
 MET 40GLU 229
C
 MET 40PHE 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1V8D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
40 58Right-handed alpha
Helix 2
2
A
71 77Right-handed alpha
Helix 3
3
A
85 102Right-handed alpha
Helix 4
4
A
112 116Right-handed 310
Helix 5
5
A
123 129Right-handed alpha
Helix 6
6
A
144 154Right-handed alpha
Helix 7
7
A
178 182Right-handed 310
Helix 8
8
A
219 229Right-handed alpha
Helix 9
9
B
40 58Right-handed alpha
Helix 10
10
B
71 76Right-handed alpha
Helix 11
11
B
85 102Right-handed alpha
Helix 12
12
B
112 116Right-handed 310
Helix 13
13
B
123 130Right-handed alpha
Helix 14
14
B
144 154Right-handed alpha
Helix 15
15
B
178 182Right-handed 310
Helix 16
16
B
219 228Right-handed alpha
Helix 17
17
C
40 58Right-handed alpha
Helix 18
18
C
71 77Right-handed alpha
Helix 19
19
C
85 103Right-handed alpha
Helix 20
20
C
112 116Right-handed 310
Helix 21
21
C
123 130Right-handed alpha
Helix 22
22
C
144 154Right-handed alpha
Helix 23
23
C
178 182Right-handed 310
Helix 24
24
C
219 230Right-handed alpha
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There are 7 sheets in PDB entry 1V8D. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
199 206anti-parallel
Strand 3
A
195 196anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 189first strand
Strand 2
A
199 206anti-parallel
Strand 3
A
169 173anti-parallel
Strand 4
A
65 70parallel
Strand 5
A
106 110parallel
Strand 6
A
119 122anti-parallel
Strand 7
A
157 160anti-parallel
Strand 8
A
133 135anti-parallel
Strand 9
C
209 210parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
B
133 135parallel
Strand 3
B
157 160anti-parallel
Strand 4
B
119 122anti-parallel
Strand 5
B
106 110anti-parallel
Strand 6
B
65 70parallel
Strand 7
B
169 173parallel
Strand 8
B
199 206anti-parallel
Strand 9
B
186 189anti-parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 210first strand
Strand 2
B
133 135parallel
Strand 3
B
157 160anti-parallel
Strand 4
B
119 122anti-parallel
Strand 5
B
106 110anti-parallel
Strand 6
B
65 70parallel
Strand 7
B
169 173parallel
Strand 8
B
199 206anti-parallel
Strand 9
B
195 196anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 210first strand
Strand 2
C
134 135parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 160first strand
Strand 2
C
119 122anti-parallel
Strand 3
C
106 110anti-parallel
Strand 4
C
65 70parallel
Strand 5
C
169 173parallel
Strand 6
C
199 206anti-parallel
Strand 7
C
186 189anti-parallel
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There are 7 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
157 160first strand
Strand 2
C
119 122anti-parallel
Strand 3
C
106 110anti-parallel
Strand 4
C
65 70parallel
Strand 5
C
169 173parallel
Strand 6
C
199 206anti-parallel
Strand 7
C
195 196anti-parallel
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