Analysis of interatomic Contacts of Structural Units in PDB entry:
1V8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V8E entry

There is 1 chain in PDB entry 1V8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8GLY 224
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1V8E. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 34Right-handed alpha
Helix 2
2
A
65 67Right-handed 310
Helix 3
3
A
68 76Right-handed alpha
Helix 4
4
A
81 87Right-handed alpha
Helix 5
5
A
88 91Right-handed 310
Helix 6
6
A
107 119Right-handed alpha
Helix 7
7
A
131 142Right-handed alpha
Helix 8
8
A
155 162Right-handed 310
Helix 9
9
A
171 174Right-handed 310
Helix 10
10
A
175 185Right-handed alpha
Helix 11
11
A
196 206Right-handed alpha
Helix 12
12
A
215 220Right-handed alpha
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There are 2 sheets in PDB entry 1V8E. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
38 45anti-parallel
Strand 3
A
96 101parallel
Strand 4
A
125 129parallel
Strand 5
A
147 151parallel
Strand 6
A
166 169parallel
Strand 7
A
188 191parallel
Strand 8
A
210 213parallel
Strand 9
A
9 13parallel
Strand 10
A
38 45parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
62 63anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il