Analysis of interatomic Contacts of Structural Units in PDB entry:
1V8K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V8K entry

There is 1 chain in PDB entry 1V8K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 42SER 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1V8K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 58Right-handed alpha
Helix 2
2
A
83 89Right-handed alpha
Helix 3
3
A
134 142Right-handed alpha
Helix 4
4
A
143 145Right-handed 310
Helix 5
5
A
146 152Right-handed alpha
Helix 6
6
A
167 174Right-handed alpha
Helix 7
7
A
182 185Right-handed 310
Helix 8
8
A
186 200Right-handed alpha
Helix 9
9
A
201 206Right-handed alpha
Helix 10
10
A
255 269Right-handed alpha
Helix 11
11
A
326 345Right-handed alpha
Helix 12
12
A
356 362Right-handed alpha
Helix 13
13
A
363 368Right-handed alpha
Helix 14
14
A
382 384Right-handed 310
Helix 15
15
A
385 401Right-handed alpha
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There are 3 sheets in PDB entry 1V8K. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
73 79parallel
Strand 3
A
371 379parallel
Strand 4
A
155 162parallel
Strand 5
A
298 306parallel
Strand 6
A
285 293anti-parallel
Strand 7
A
210 219anti-parallel
Strand 8
A
222 225anti-parallel
Strand 9
A
232 237anti-parallel
Strand 10
A
243 246anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
73 79parallel
Strand 3
A
371 379parallel
Strand 4
A
155 162parallel
Strand 5
A
298 306parallel
Strand 6
A
285 293anti-parallel
Strand 7
A
210 219anti-parallel
Strand 8
A
251 253anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 96first strand
Strand 2
A
102 110anti-parallel
Strand 3
A
116 124anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il