Analysis of interatomic Contacts of Structural Units in PDB entry:
1V8Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V8Z entry

There are 4 chains in PDB entry 1V8Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 386
B
 MET 1ASN 387
C
 MET 1ASN 387
D
 MET 1GLY 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 83 helices in PDB entry 1V8Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 14Right-handed 310
Helix 2
2
A
15 31Right-handed alpha
Helix 3
3
A
32 46Right-handed alpha
Helix 4
4
A
56 64Right-handed alpha
Helix 5
5
A
74 76Right-handed 310
Helix 6
6
A
81 96Right-handed alpha
Helix 7
7
A
108 121Right-handed alpha
Helix 8
8
A
131 135Right-handed alpha
Helix 9
9
A
137 147Right-handed alpha
Helix 10
10
A
160 176Right-handed alpha
Helix 11
11
A
191 216Right-handed alpha
Helix 12
12
A
229 237Right-handed alpha
Helix 13
13
A
238 240Right-handed 310
Helix 14
14
A
256 260Right-handed 310
Helix 15
15
A
264 269Right-handed alpha
Helix 16
16
A
305 314Right-handed alpha
Helix 17
17
A
324 339Right-handed alpha
Helix 18
18
A
343 359Right-handed alpha
Helix 19
19
A
374 376Right-handed 310
Helix 20
20
A
377 386Right-handed alpha
Helix 21
21
B
12 14Right-handed 310
Helix 22
22
B
15 30Right-handed alpha
Helix 23
23
B
32 46Right-handed alpha
Helix 24
24
B
56 64Right-handed alpha
Helix 25
25
B
73 76Right-handed 310
Helix 26
26
B
81 96Right-handed alpha
Helix 27
27
B
108 121Right-handed alpha
Helix 28
28
B
131 135Right-handed alpha
Helix 29
29
B
137 147Right-handed alpha
Helix 30
30
B
160 176Right-handed alpha
Helix 31
31
B
191 216Right-handed alpha
Helix 32
32
B
229 237Right-handed alpha
Helix 33
33
B
238 240Right-handed 310
Helix 34
34
B
256 260Right-handed 310
Helix 35
35
B
264 269Right-handed alpha
Helix 36
36
B
296 300Right-handed 310
Helix 37
37
B
305 314Right-handed alpha
Helix 38
38
B
324 339Right-handed alpha
Helix 39
39
B
343 359Right-handed alpha
Helix 40
40
B
374 376Right-handed 310
Helix 41
41
B
377 386Right-handed alpha
Helix 42
42
C
12 30Right-handed alpha
Helix 43
43
C
32 46Right-handed alpha
Helix 44
44
C
56 64Right-handed alpha
Helix 45
45
C
74 76Right-handed 310
Helix 46
46
C
81 96Right-handed alpha
Helix 47
47
C
108 121Right-handed alpha
Helix 48
48
C
131 135Right-handed alpha
Helix 49
49
C
137 147Right-handed alpha
Helix 50
50
C
160 176Right-handed alpha
Helix 51
51
C
191 201Right-handed alpha
Helix 52
52
C
201 216Right-handed alpha
Helix 53
53
C
229 237Right-handed alpha
Helix 54
54
C
238 240Right-handed 310
Helix 55
55
C
256 260Right-handed 310
Helix 56
56
C
264 269Right-handed alpha
Helix 57
57
C
296 300Right-handed 310
Helix 58
58
C
305 314Right-handed alpha
Helix 59
59
C
324 339Right-handed alpha
Helix 60
60
C
343 359Right-handed alpha
Helix 61
61
C
374 376Right-handed 310
Helix 62
62
C
377 386Right-handed alpha
Helix 63
63
D
12 31Right-handed alpha
Helix 64
64
D
32 46Right-handed alpha
Helix 65
65
D
56 64Right-handed alpha
Helix 66
66
D
74 76Right-handed 310
Helix 67
67
D
81 96Right-handed alpha
Helix 68
68
D
108 121Right-handed alpha
Helix 69
69
D
131 135Right-handed alpha
Helix 70
70
D
137 147Right-handed alpha
Helix 71
71
D
160 176Right-handed alpha
Helix 72
72
D
191 216Right-handed alpha
Helix 73
73
D
229 237Right-handed alpha
Helix 74
74
D
238 240Right-handed 310
Helix 75
75
D
256 260Right-handed 310
Helix 76
76
D
264 269Right-handed alpha
Helix 77
77
D
296 300Right-handed 310
Helix 78
78
D
305 314Right-handed alpha
Helix 79
79
D
324 339Right-handed alpha
Helix 80
80
D
345 359Right-handed alpha
Helix 81
81
D
374 376Right-handed 310
Helix 82
82
D
377 382Right-handed alpha
Helix 83
83
D
384 386Right-handed 310
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There are 16 sheets in PDB entry 1V8Z. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 3first strand
Strand 2
A
6 7anti-parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
67 72anti-parallel
Strand 3
A
365 370parallel
Strand 4
A
221 225parallel
Strand 5
A
246 254parallel
Strand 6
A
317 323parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 154first strand
Strand 2
A
124 130parallel
Strand 3
A
100 105parallel
Strand 4
A
179 181parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 274first strand
Strand 2
A
277 281anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 3first strand
Strand 2
B
6 7anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
67 71anti-parallel
Strand 3
B
365 369parallel
Strand 4
B
221 225parallel
Strand 5
B
246 254parallel
Strand 6
B
317 323parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 154first strand
Strand 2
B
124 130parallel
Strand 3
B
100 104parallel
Strand 4
B
179 181parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 274first strand
Strand 2
B
277 281anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 3first strand
Strand 2
C
6 7anti-parallel
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There are 6 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
53 55first strand
Strand 2
C
67 72anti-parallel
Strand 3
C
365 370parallel
Strand 4
C
221 225parallel
Strand 5
C
246 254parallel
Strand 6
C
318 323parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 154first strand
Strand 2
C
124 130parallel
Strand 3
C
100 104parallel
Strand 4
C
179 181parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
270 274first strand
Strand 2
C
277 281anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 3first strand
Strand 2
D
6 7anti-parallel
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There are 6 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 55first strand
Strand 2
D
67 72anti-parallel
Strand 3
D
365 370parallel
Strand 4
D
221 225parallel
Strand 5
D
246 254parallel
Strand 6
D
317 323parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
150 154first strand
Strand 2
D
124 130parallel
Strand 3
D
100 104parallel
Strand 4
D
179 181parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
270 274first strand
Strand 2
D
277 281anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il