Analysis of interatomic Contacts of Structural Units in PDB entry:
1V9C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V9C entry

There are 2 chains in PDB entry 1V9C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 6VAL 209
B
 GLY 5SER 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 1V9C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 21Right-handed alpha
Helix 2
2
A
29 41Right-handed alpha
Helix 3
3
A
44 48Right-handed alpha
Helix 4
4
A
54 65Right-handed alpha
Helix 5
5
A
73 80Right-handed alpha
Helix 6
6
A
81 86Right-handed alpha
Helix 7
7
A
87 89Right-handed 310
Helix 8
8
A
98 104Right-handed alpha
Helix 9
9
A
111 122Right-handed alpha
Helix 10
10
A
140 149Right-handed alpha
Helix 11
11
A
165 174Right-handed alpha
Helix 12
12
A
189 206Right-handed alpha
Helix 13
13
B
5 21Right-handed alpha
Helix 14
14
B
29 41Right-handed alpha
Helix 15
15
B
44 48Right-handed alpha
Helix 16
16
B
54 66Right-handed alpha
Helix 17
17
B
73 80Right-handed alpha
Helix 18
18
B
81 89Right-handed alpha
Helix 19
19
B
98 108Right-handed alpha
Helix 20
20
B
111 123Right-handed alpha
Helix 21
21
B
136 148Right-handed alpha
Helix 22
22
B
165 175Right-handed alpha
Helix 23
23
B
189 206Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1V9C. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
180 183anti-parallel
Strand 3
A
155 158parallel
Strand 4
A
130 133parallel
Strand 5
A
69 71parallel
Strand 6
A
92 94parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 51first strand
Strand 2
B
180 183anti-parallel
Strand 3
B
155 158parallel
Strand 4
B
130 133parallel
Strand 5
B
69 71parallel
Strand 6
B
92 94parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il