Analysis of interatomic Contacts of Structural Units in PDB entry:
1V9D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V9D entry

There are 4 chains in PDB entry 1V9D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 829LEU 1160
B
 LYS 830LEU 1150
C
 VAL 829LEU 1150
D
 LYS 830LEU 1150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 1V9D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
836 851Right-handed alpha
Helix 2
2
A
853 864Right-handed alpha
Helix 3
3
A
870 881Right-handed alpha
Helix 4
4
A
883 892Right-handed alpha
Helix 5
5
A
893 900Right-handed 310
Helix 6
6
A
901 912Right-handed alpha
Helix 7
7
A
915 935Right-handed alpha
Helix 8
8
A
936 952Right-handed alpha
Helix 9
9
A
953 959Right-handed alpha
Helix 10
10
A
986 993Right-handed alpha
Helix 11
11
A
1001 1013Right-handed alpha
Helix 12
12
A
1019 1024Right-handed 310
Helix 13
13
A
1026 1033Right-handed alpha
Helix 14
14
A
1034 1058Right-handed alpha
Helix 15
15
A
1068 1105Right-handed alpha
Helix 16
16
A
1113 1160Right-handed alpha
Helix 17
17
B
836 849Right-handed alpha
Helix 18
18
B
853 864Right-handed alpha
Helix 19
19
B
870 881Right-handed alpha
Helix 20
20
B
883 890Right-handed alpha
Helix 21
21
B
901 911Right-handed alpha
Helix 22
22
B
915 953Right-handed alpha
Helix 23
23
B
953 969Right-handed alpha
Helix 24
24
B
983 988Right-handed alpha
Helix 25
25
B
989 993Right-handed 310
Helix 26
26
B
1001 1014Right-handed alpha
Helix 27
27
B
1015 1025Right-handed 310
Helix 28
28
B
1026 1032Right-handed alpha
Helix 29
29
B
1034 1058Right-handed alpha
Helix 30
30
B
1068 1105Right-handed alpha
Helix 31
31
B
1113 1147Right-handed alpha
Helix 32
32
C
836 851Right-handed alpha
Helix 33
33
C
853 863Right-handed alpha
Helix 34
34
C
870 881Right-handed alpha
Helix 35
35
C
883 892Right-handed alpha
Helix 36
36
C
893 897Right-handed 310
Helix 37
37
C
901 911Right-handed alpha
Helix 38
38
C
915 952Right-handed alpha
Helix 39
39
C
1001 1013Right-handed alpha
Helix 40
40
C
1026 1033Right-handed alpha
Helix 41
41
C
1034 1058Right-handed alpha
Helix 42
42
C
1068 1105Right-handed alpha
Helix 43
43
C
1113 1147Right-handed alpha
Helix 44
44
D
836 849Right-handed alpha
Helix 45
45
D
853 864Right-handed alpha
Helix 46
46
D
870 881Right-handed alpha
Helix 47
47
D
883 892Right-handed alpha
Helix 48
48
D
901 911Right-handed alpha
Helix 49
49
D
915 953Right-handed alpha
Helix 50
50
D
953 963Right-handed alpha
Helix 51
51
D
989 993Right-handed 310
Helix 52
52
D
1001 1014Right-handed alpha
Helix 53
53
D
1016 1025Right-handed 310
Helix 54
54
D
1026 1033Right-handed alpha
Helix 55
55
D
1034 1058Right-handed alpha
Helix 56
56
D
1068 1105Right-handed alpha
Helix 57
57
D
1113 1146Right-handed alpha
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There are no sheets in PDB entry 1V9D
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il