Analysis of interatomic Contacts of Structural Units in PDB entry:
1V9P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1V9P entry

There are 2 chains in PDB entry 1V9P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 584
B
 MET 2001LYS 2584
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 56 helices in PDB entry 1V9P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 26Right-handed alpha
Helix 2
2
A
37 51Right-handed alpha
Helix 3
3
A
52 55Right-handed 310
Helix 4
4
A
60 64Right-handed 310
Helix 5
5
A
95 103Right-handed alpha
Helix 6
6
A
150 154Right-handed 310
Helix 7
7
A
178 193Right-handed alpha
Helix 8
8
A
201 209Right-handed alpha
Helix 9
9
A
212 217Right-handed alpha
Helix 10
10
A
239 250Right-handed alpha
Helix 11
11
A
263 276Right-handed alpha
Helix 12
12
A
294 299Right-handed 310
Helix 13
13
A
361 368Right-handed alpha
Helix 14
14
A
382 384Right-handed 310
Helix 15
15
A
393 396Right-handed 310
Helix 16
16
A
430 432Right-handed 310
Helix 17
17
A
433 443Right-handed alpha
Helix 18
18
A
453 463Right-handed alpha
Helix 19
19
A
469 475Right-handed 310
Helix 20
20
A
490 501Right-handed alpha
Helix 21
21
A
502 504Right-handed 310
Helix 22
22
A
505 513Right-handed alpha
Helix 23
23
A
519 528Right-handed alpha
Helix 24
24
A
532 538Right-handed alpha
Helix 25
25
A
540 546Right-handed alpha
Helix 26
26
A
551 564Right-handed alpha
Helix 27
27
A
564 576Right-handed alpha
Helix 28
28
B
2002 2026Right-handed alpha
Helix 29
29
B
2033 2051Right-handed alpha
Helix 30
30
B
2052 2055Right-handed 310
Helix 31
31
B
2059 2063Right-handed 310
Helix 32
32
B
2090 2102Right-handed alpha
Helix 33
33
B
2148 2153Right-handed alpha
Helix 34
34
B
2178 2192Right-handed alpha
Helix 35
35
B
2199 2209Right-handed alpha
Helix 36
36
B
2212 2217Right-handed alpha
Helix 37
37
B
2239 2250Right-handed alpha
Helix 38
38
B
2263 2278Right-handed alpha
Helix 39
39
B
2279 2281Right-handed 310
Helix 40
40
B
2295 2301Right-handed alpha
Helix 41
41
B
2361 2368Right-handed alpha
Helix 42
42
B
2382 2384Right-handed 310
Helix 43
43
B
2393 2396Right-handed 310
Helix 44
44
B
2430 2432Right-handed 310
Helix 45
45
B
2433 2443Right-handed alpha
Helix 46
46
B
2453 2464Right-handed alpha
Helix 47
47
B
2468 2476Right-handed 310
Helix 48
48
B
2477 2482Right-handed alpha
Helix 49
49
B
2490 2498Right-handed alpha
Helix 50
50
B
2500 2504Right-handed 310
Helix 51
51
B
2505 2514Right-handed alpha
Helix 52
52
B
2519 2531Right-handed alpha
Helix 53
53
B
2532 2537Right-handed alpha
Helix 54
54
B
2540 2546Right-handed alpha
Helix 55
55
B
2551 2563Right-handed alpha
Helix 56
56
B
2564 2577Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 1V9P. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
144 146anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 88first strand
Strand 2
A
311 315parallel
Strand 3
A
285 292anti-parallel
Strand 4
A
112 119anti-parallel
Strand 5
A
258 262anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 138first strand
Strand 2
A
122 129anti-parallel
Strand 3
A
168 176anti-parallel
Strand 4
A
222 228anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 358first strand
Strand 2
A
338 349anti-parallel
Strand 3
A
321 332anti-parallel
Strand 4
A
375 381anti-parallel
Strand 5
A
385 391anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 418first strand
Strand 2
A
423 424anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2075 2076first strand
Strand 2
B
2145 2146anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2087 2088first strand
Strand 2
B
2311 2315parallel
Strand 3
B
2285 2291anti-parallel
Strand 4
B
2112 2119anti-parallel
Strand 5
B
2258 2262anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2132 2138first strand
Strand 2
B
2124 2129anti-parallel
Strand 3
B
2168 2173anti-parallel
Strand 4
B
2225 2228anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2321 2324first strand
Strand 2
B
2375 2380anti-parallel
Strand 3
B
2386 2391anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2329 2332first strand
Strand 2
B
2338 2348anti-parallel
Strand 3
B
2353 2358anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il