Analysis of interatomic Contacts of Structural Units in PDB entry:
1VA5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VA5 entry

There are 2 chains in PDB entry 1VA5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0GLY 282
B
 MET 0GLY 282
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 1VA5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 53Right-handed alpha
Helix 2
2
A
54 60Right-handed alpha
Helix 3
3
A
94 101Right-handed alpha
Helix 4
4
A
101 112Right-handed alpha
Helix 5
5
A
124 137Right-handed alpha
Helix 6
6
A
157 169Right-handed alpha
Helix 7
7
A
173 179Right-handed alpha
Helix 8
8
A
183 189Right-handed alpha
Helix 9
9
A
194 202Right-handed alpha
Helix 10
10
A
221 245Right-handed alpha
Helix 11
11
A
261 282Right-handed alpha
Helix 12
12
B
47 53Right-handed alpha
Helix 13
13
B
54 60Right-handed alpha
Helix 14
14
B
94 101Right-handed alpha
Helix 15
15
B
101 112Right-handed alpha
Helix 16
16
B
124 137Right-handed alpha
Helix 17
17
B
157 169Right-handed alpha
Helix 18
18
B
173 179Right-handed alpha
Helix 19
19
B
184 189Right-handed alpha
Helix 20
20
B
194 201Right-handed alpha
Helix 21
21
B
221 245Right-handed alpha
Helix 22
22
B
261 282Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 1VA5. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 15first strand
Strand 2
A
20 27anti-parallel
Strand 3
A
65 69anti-parallel
Strand 4
A
33 36parallel
Strand 5
A
119 123parallel
Strand 6
A
143 147parallel
Strand 7
A
204 208parallel
Strand 8
A
250 253parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 15first strand
Strand 2
B
20 27anti-parallel
Strand 3
B
65 69anti-parallel
Strand 4
B
33 36parallel
Strand 5
B
119 123parallel
Strand 6
B
143 147parallel
Strand 7
B
204 208parallel
Strand 8
B
250 253parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il