Analysis of interatomic Contacts of Structural Units in PDB entry:
1VA6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VA6 entry

There are 2 chains in PDB entry 1VA6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 515
B
 MET 1GLU 515
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 52 helices in PDB entry 1VA6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 15Right-handed alpha
Helix 2
2
A
16 20Right-handed 310
Helix 3
3
A
45 49Right-handed 310
Helix 4
4
A
75 92Right-handed alpha
Helix 5
5
A
122 140Right-handed alpha
Helix 6
6
A
140 145Right-handed alpha
Helix 7
7
A
156 165Right-handed alpha
Helix 8
8
A
168 191Right-handed alpha
Helix 9
9
A
192 199Right-handed alpha
Helix 10
10
A
205 209Right-handed 310
Helix 11
11
A
233 237Right-handed 310
Helix 12
12
A
243 247Right-handed 310
Helix 13
13
A
255 268Right-handed alpha
Helix 14
14
A
271 276Right-handed alpha
Helix 15
15
A
295 299Right-handed 310
Helix 16
16
A
314 323Right-handed alpha
Helix 17
17
A
343 360Right-handed alpha
Helix 18
18
A
366 373Right-handed alpha
Helix 19
19
A
373 384Right-handed alpha
Helix 20
20
A
402 425Right-handed alpha
Helix 21
21
A
427 438Right-handed alpha
Helix 22
22
A
442 445Right-handed 310
Helix 23
23
A
446 458Right-handed alpha
Helix 24
24
A
463 477Right-handed alpha
Helix 25
25
A
484 506Right-handed alpha
Helix 26
26
A
509 515Right-handed alpha
Helix 27
27
B
5 15Right-handed alpha
Helix 28
28
B
16 20Right-handed 310
Helix 29
29
B
45 49Right-handed 310
Helix 30
30
B
75 93Right-handed alpha
Helix 31
31
B
122 140Right-handed alpha
Helix 32
32
B
140 145Right-handed alpha
Helix 33
33
B
156 165Right-handed alpha
Helix 34
34
B
170 191Right-handed alpha
Helix 35
35
B
192 199Right-handed alpha
Helix 36
36
B
205 209Right-handed 310
Helix 37
37
B
233 237Right-handed 310
Helix 38
38
B
243 247Right-handed 310
Helix 39
39
B
255 267Right-handed alpha
Helix 40
40
B
271 276Right-handed alpha
Helix 41
41
B
295 299Right-handed 310
Helix 42
42
B
314 323Right-handed alpha
Helix 43
43
B
343 360Right-handed alpha
Helix 44
44
B
366 384Right-handed alpha
Helix 45
45
B
402 425Right-handed alpha
Helix 46
46
B
427 438Right-handed alpha
Helix 47
47
B
439 441Right-handed 310
Helix 48
48
B
442 445Right-handed 310
Helix 49
49
B
446 458Right-handed alpha
Helix 50
50
B
463 477Right-handed alpha
Helix 51
51
B
484 505Right-handed alpha
Helix 52
52
B
509 515Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 1VA6. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
65 69anti-parallel
Strand 3
A
23 33anti-parallel
Strand 4
A
98 99anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
65 69anti-parallel
Strand 3
A
23 33anti-parallel
Strand 4
A
148 154anti-parallel
Strand 5
A
326 333anti-parallel
Strand 6
A
303 306anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 204first strand
Strand 2
A
226 227anti-parallel
Strand 3
A
219 220anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 281first strand
Strand 2
A
284 285anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 391first strand
Strand 2
A
400 401anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
65 69anti-parallel
Strand 3
B
23 33anti-parallel
Strand 4
B
98 99anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 59first strand
Strand 2
B
65 69anti-parallel
Strand 3
B
23 33anti-parallel
Strand 4
B
148 154anti-parallel
Strand 5
B
326 333anti-parallel
Strand 6
B
303 306anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
203 204first strand
Strand 2
B
226 227anti-parallel
Strand 3
B
219 220anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
280 281first strand
Strand 2
B
284 285anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
390 391first strand
Strand 2
B
400 401anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il