Analysis of interatomic Contacts of Structural Units in PDB entry:
1VAO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VAO entry

There are 2 chains in PDB entry 1VAO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6LEU 560
B
 GLU 6LEU 560
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 1VAO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 32Right-handed alpha
Helix 2
2
A
34 36Right-handed 310
Helix 3
3
A
80 93Right-handed alpha
Helix 4
4
A
123 126Right-handed alpha
Helix 5
5
A
148 158Right-handed alpha
Helix 6
6
A
160 162Right-handed 310
Helix 7
7
A
176 182Right-handed alpha
Helix 8
8
A
194 196Right-handed 310
Helix 9
9
A
213 215Right-handed 310
Helix 10
10
A
223 225Right-handed 310
Helix 11
11
A
230 232Right-handed 310
Helix 12
12
A
251 254Right-handed 310
Helix 13
13
A
286 302Right-handed 310
Helix 14
14
A
314 321Right-handed alpha
Helix 15
15
A
324 326Right-handed 310
Helix 16
16
A
336 346Right-handed alpha
Helix 17
17
A
361 377Right-handed alpha
Helix 18
18
A
386 388Right-handed 310
Helix 19
19
A
394 403Right-handed alpha
Helix 20
20
A
409 416Right-handed 310
Helix 21
21
A
433 449Right-handed alpha
Helix 22
22
A
478 498Right-handed alpha
Helix 23
23
A
510 516Right-handed alpha
Helix 24
24
A
519 535Right-handed alpha
Helix 25
25
A
545 547Right-handed 310
Helix 26
26
A
555 558Right-handed alpha
Helix 27
27
B
18 32Right-handed alpha
Helix 28
28
B
34 36Right-handed 310
Helix 29
29
B
80 93Right-handed alpha
Helix 30
30
B
123 126Right-handed alpha
Helix 31
31
B
148 158Right-handed alpha
Helix 32
32
B
160 162Right-handed 310
Helix 33
33
B
176 182Right-handed alpha
Helix 34
34
B
194 196Right-handed 310
Helix 35
35
B
213 215Right-handed 310
Helix 36
36
B
223 225Right-handed 310
Helix 37
37
B
230 232Right-handed 310
Helix 38
38
B
251 254Right-handed 310
Helix 39
39
B
286 302Right-handed 310
Helix 40
40
B
314 321Right-handed alpha
Helix 41
41
B
324 326Right-handed 310
Helix 42
42
B
336 346Right-handed alpha
Helix 43
43
B
361 377Right-handed alpha
Helix 44
44
B
386 388Right-handed 310
Helix 45
45
B
394 403Right-handed alpha
Helix 46
46
B
409 416Right-handed 310
Helix 47
47
B
433 449Right-handed alpha
Helix 48
48
B
478 498Right-handed alpha
Helix 49
49
B
510 516Right-handed alpha
Helix 50
50
B
519 535Right-handed alpha
Helix 51
51
B
545 547Right-handed 310
Helix 52
52
B
555 558Right-handed alpha
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There are 6 sheets in PDB entry 1VAO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
73 75anti-parallel
Strand 3
A
119 122parallel
Strand 4
A
97 100parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
139 142anti-parallel
Strand 3
A
261 268anti-parallel
Strand 4
A
200 203anti-parallel
Strand 5
A
209 211anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 384first strand
Strand 2
A
276 283anti-parallel
Strand 3
A
351 358anti-parallel
Strand 4
A
310 313anti-parallel
Strand 5
A
456 460anti-parallel
Strand 6
A
465 474anti-parallel
Strand 7
A
420 425anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
73 75anti-parallel
Strand 3
B
119 122parallel
Strand 4
B
97 100parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 134first strand
Strand 2
B
139 142anti-parallel
Strand 3
B
261 268anti-parallel
Strand 4
B
200 203anti-parallel
Strand 5
B
209 211anti-parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 384first strand
Strand 2
B
276 283anti-parallel
Strand 3
B
351 358anti-parallel
Strand 4
B
310 313anti-parallel
Strand 5
B
456 460anti-parallel
Strand 6
B
465 474anti-parallel
Strand 7
B
420 425anti-parallel
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