Analysis of interatomic Contacts of Structural Units in PDB entry:
1VAY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VAY entry

There are 8 chains in PDB entry 1VAY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 11ASN 297
B
 THR 11ASN 297
C
 THR 11ASN 297
D
 THR 11ASN 297
E
 THR 11ASN 297
F
 THR 11ASN 297
G
 THR 11ASN 297
H
 THR 11ASN 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 1VAY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
52 58Right-handed alpha
Helix 2
2
A
66 80Right-handed alpha
Helix 3
3
A
84 99Right-handed alpha
Helix 4
4
A
198 217Right-handed alpha
Helix 5
5
A
221 237Right-handed alpha
Helix 6
6
A
257 261Right-handed 310
Helix 7
7
A
292 296Right-handed 310
Helix 8
8
B
52 58Right-handed alpha
Helix 9
9
B
60 64Right-handed 310
Helix 10
10
B
66 79Right-handed alpha
Helix 11
11
B
84 100Right-handed alpha
Helix 12
12
B
198 217Right-handed alpha
Helix 13
13
B
221 237Right-handed alpha
Helix 14
14
B
257 261Right-handed 310
Helix 15
15
B
292 297Right-handed 310
Helix 16
16
C
52 59Right-handed alpha
Helix 17
17
C
66 79Right-handed alpha
Helix 18
18
C
84 100Right-handed alpha
Helix 19
19
C
198 217Right-handed alpha
Helix 20
20
C
221 237Right-handed alpha
Helix 21
21
C
257 261Right-handed 310
Helix 22
22
C
292 296Right-handed 310
Helix 23
23
D
52 59Right-handed alpha
Helix 24
24
D
60 64Right-handed 310
Helix 25
25
D
66 81Right-handed alpha
Helix 26
26
D
84 100Right-handed alpha
Helix 27
27
D
198 217Right-handed alpha
Helix 28
28
D
221 237Right-handed alpha
Helix 29
29
D
257 261Right-handed 310
Helix 30
30
D
292 297Right-handed 310
Helix 31
31
E
52 58Right-handed alpha
Helix 32
32
E
66 79Right-handed alpha
Helix 33
33
E
84 100Right-handed alpha
Helix 34
34
E
198 217Right-handed alpha
Helix 35
35
E
221 237Right-handed alpha
Helix 36
36
E
257 261Right-handed 310
Helix 37
37
E
292 296Right-handed 310
Helix 38
38
F
52 58Right-handed alpha
Helix 39
39
F
60 64Right-handed 310
Helix 40
40
F
66 79Right-handed alpha
Helix 41
41
F
84 100Right-handed alpha
Helix 42
42
F
198 217Right-handed alpha
Helix 43
43
F
221 237Right-handed alpha
Helix 44
44
F
257 261Right-handed 310
Helix 45
45
F
292 296Right-handed 310
Helix 46
46
G
52 59Right-handed alpha
Helix 47
47
G
66 79Right-handed alpha
Helix 48
48
G
84 100Right-handed alpha
Helix 49
49
G
198 217Right-handed alpha
Helix 50
50
G
221 237Right-handed alpha
Helix 51
51
G
257 261Right-handed 310
Helix 52
52
G
292 297Right-handed 310
Helix 53
53
H
52 58Right-handed alpha
Helix 54
54
H
60 64Right-handed 310
Helix 55
55
H
66 79Right-handed alpha
Helix 56
56
H
84 100Right-handed alpha
Helix 57
57
H
198 217Right-handed alpha
Helix 58
58
H
221 237Right-handed alpha
Helix 59
59
H
257 261Right-handed 310
Helix 60
60
H
292 297Right-handed 310
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There are 2 sheets in PDB entry 1VAY. Click on sheet of interest to get list of strands forming it: A, B,

There are 61 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
252 254first strand
Strand 2
D
268 271anti-parallel
Strand 3
C
13 31anti-parallel
Strand 4
C
38 50anti-parallel
Strand 5
C
103 107anti-parallel
Strand 6
C
124 130anti-parallel
Strand 7
C
143 157anti-parallel
Strand 8
D
124 130anti-parallel
Strand 9
D
103 107anti-parallel
Strand 10
D
38 50anti-parallel
Strand 11
D
13 31anti-parallel
Strand 12
C
268 271anti-parallel
Strand 13
C
252 254anti-parallel
Strand 14
C
268 271anti-parallel
Strand 15
D
13 31anti-parallel
Strand 16
A
276 285anti-parallel
Strand 17
A
240 249anti-parallel
Strand 18
A
182 192anti-parallel
Strand 19
A
143 157anti-parallel
Strand 20
A
124 130anti-parallel
Strand 21
A
103 107anti-parallel
Strand 22
A
38 50anti-parallel
Strand 23
A
13 31anti-parallel
Strand 24
D
276 285anti-parallel
Strand 25
D
240 249anti-parallel
Strand 26
D
182 192anti-parallel
Strand 27
D
143 157anti-parallel
Strand 28
D
124 130anti-parallel
Strand 29
D
143 157anti-parallel
Strand 30
C
124 130anti-parallel
Strand 31
C
143 157anti-parallel
Strand 32
C
182 192anti-parallel
Strand 33
C
240 249anti-parallel
Strand 34
C
276 285anti-parallel
Strand 35
B
13 31anti-parallel
Strand 36
A
268 271anti-parallel
Strand 37
A
252 254anti-parallel
Strand 38
A
268 271anti-parallel
Strand 39
B
13 31anti-parallel
Strand 40
B
38 50anti-parallel
Strand 41
B
103 107anti-parallel
Strand 42
B
124 130anti-parallel
Strand 43
A
143 157anti-parallel
Strand 44
A
124 130anti-parallel
Strand 45
B
143 157anti-parallel
Strand 46
B
124 130anti-parallel
Strand 47
B
143 157anti-parallel
Strand 48
B
182 192anti-parallel
Strand 49
B
240 249anti-parallel
Strand 50
B
276 285anti-parallel
Strand 51
C
13 31anti-parallel
Strand 52
B
276 285anti-parallel
Strand 53
B
240 249anti-parallel
Strand 54
B
182 192anti-parallel
Strand 55
B
143 157anti-parallel
Strand 56
A
124 130anti-parallel
Strand 57
A
103 107anti-parallel
Strand 58
A
38 50anti-parallel
Strand 59
A
13 31anti-parallel
Strand 60
B
268 271anti-parallel
Strand 61
B
252 254anti-parallel
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There are 61 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
252 254first strand
Strand 2
H
268 271anti-parallel
Strand 3
G
13 31anti-parallel
Strand 4
G
38 50anti-parallel
Strand 5
G
103 107anti-parallel
Strand 6
G
124 130anti-parallel
Strand 7
G
143 157anti-parallel
Strand 8
H
124 130anti-parallel
Strand 9
H
103 107anti-parallel
Strand 10
H
38 50anti-parallel
Strand 11
H
13 31anti-parallel
Strand 12
G
268 271anti-parallel
Strand 13
G
252 254anti-parallel
Strand 14
G
268 271anti-parallel
Strand 15
H
13 31anti-parallel
Strand 16
E
276 285anti-parallel
Strand 17
E
240 249anti-parallel
Strand 18
E
182 192anti-parallel
Strand 19
E
143 157anti-parallel
Strand 20
E
124 130anti-parallel
Strand 21
E
103 107anti-parallel
Strand 22
E
38 50anti-parallel
Strand 23
E
13 31anti-parallel
Strand 24
H
276 285anti-parallel
Strand 25
H
240 249anti-parallel
Strand 26
H
182 192anti-parallel
Strand 27
H
143 157anti-parallel
Strand 28
H
124 130anti-parallel
Strand 29
H
143 157anti-parallel
Strand 30
G
124 130anti-parallel
Strand 31
G
143 157anti-parallel
Strand 32
G
182 192anti-parallel
Strand 33
G
240 249anti-parallel
Strand 34
G
276 285anti-parallel
Strand 35
F
13 31anti-parallel
Strand 36
E
268 271anti-parallel
Strand 37
E
252 254anti-parallel
Strand 38
E
268 271anti-parallel
Strand 39
F
13 31anti-parallel
Strand 40
F
38 50anti-parallel
Strand 41
F
103 107anti-parallel
Strand 42
F
124 130anti-parallel
Strand 43
E
143 157anti-parallel
Strand 44
E
124 130anti-parallel
Strand 45
F
143 157anti-parallel
Strand 46
F
124 130anti-parallel
Strand 47
F
143 157anti-parallel
Strand 48
F
182 192anti-parallel
Strand 49
F
240 249anti-parallel
Strand 50
F
276 285anti-parallel
Strand 51
G
13 31anti-parallel
Strand 52
F
276 285anti-parallel
Strand 53
F
240 249anti-parallel
Strand 54
F
182 192anti-parallel
Strand 55
F
143 157anti-parallel
Strand 56
E
124 130anti-parallel
Strand 57
E
103 107anti-parallel
Strand 58
E
38 50anti-parallel
Strand 59
E
13 31anti-parallel
Strand 60
F
268 271anti-parallel
Strand 61
F
252 254anti-parallel
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