Analysis of interatomic Contacts of Structural Units in PDB entry:
1VB3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VB3 entry

There is 1 chain in PDB entry 1VB3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 1VB3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 22Right-handed alpha
Helix 2
2
A
24 28Right-handed 310
Helix 3
3
A
39 47Right-handed alpha
Helix 4
4
A
50 64Right-handed alpha
Helix 5
5
A
65 67Right-handed 310
Helix 6
6
A
68 80Right-handed alpha
Helix 7
7
A
106 122Right-handed alpha
Helix 8
8
A
136 145Right-handed alpha
Helix 9
9
A
163 172Right-handed alpha
Helix 10
10
A
185 196Right-handed alpha
Helix 11
11
A
199 207Right-handed alpha
Helix 12
12
A
215 222Right-handed alpha
Helix 13
13
A
223 231Right-handed alpha
Helix 14
14
A
250 262Right-handed alpha
Helix 15
15
A
277 286Right-handed alpha
Helix 16
16
A
298 302Right-handed 310
Helix 17
17
A
308 319Right-handed alpha
Helix 18
18
A
322 326Right-handed 310
Helix 19
19
A
332 346Right-handed alpha
Helix 20
20
A
351 363Right-handed alpha
Helix 21
21
A
378 381Right-handed 310
Helix 22
22
A
382 391Right-handed alpha
Helix 23
23
A
397 405Right-handed alpha
Helix 24
24
A
416 425Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1VB3. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 13first strand
Strand 2
A
3 5anti-parallel
Strand 3
A
30 32anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 90first strand
Strand 2
A
93 97anti-parallel
Strand 3
A
370 375parallel
Strand 4
A
241 246parallel
Strand 5
A
268 273parallel
Strand 6
A
327 330parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 209first strand
Strand 2
A
127 132parallel
Strand 3
A
151 158parallel
Strand 4
A
177 183parallel
Strand 5
A
411 414parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il