Analysis of interatomic Contacts of Structural Units in PDB entry:
1VB5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VB5 entry

There are 2 chains in PDB entry 1VB5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2ILE 275
B
 LEU 2GLN 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 1VB5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 16Right-handed alpha
Helix 2
2
A
20 39Right-handed alpha
Helix 3
3
A
43 59Right-handed alpha
Helix 4
4
A
62 72Right-handed alpha
Helix 5
5
A
77 107Right-handed alpha
Helix 6
6
A
119 132Right-handed alpha
Helix 7
7
A
147 159Right-handed alpha
Helix 8
8
A
167 169Right-handed 310
Helix 9
9
A
170 176Right-handed alpha
Helix 10
10
A
199 210Right-handed alpha
Helix 11
11
A
219 223Right-handed 310
Helix 12
12
A
228 232Right-handed 310
Helix 13
13
A
255 259Right-handed 310
Helix 14
14
B
3 15Right-handed alpha
Helix 15
15
B
20 39Right-handed alpha
Helix 16
16
B
40 59Right-handed alpha
Helix 17
17
B
62 72Right-handed alpha
Helix 18
18
B
77 107Right-handed alpha
Helix 19
19
B
119 132Right-handed alpha
Helix 20
20
B
147 159Right-handed alpha
Helix 21
21
B
167 169Right-handed 310
Helix 22
22
B
170 176Right-handed alpha
Helix 23
23
B
199 210Right-handed alpha
Helix 24
24
B
219 223Right-handed 310
Helix 25
25
B
228 232Right-handed 310
Helix 26
26
B
255 259Right-handed 310
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There are 6 sheets in PDB entry 1VB5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 166first strand
Strand 2
A
136 141parallel
Strand 3
A
111 114parallel
Strand 4
A
180 183parallel
Strand 5
A
214 217parallel
Strand 6
A
261 264parallel
Strand 7
A
267 269anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
194 197anti-parallel
Strand 3
A
251 254anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 241first strand
Strand 2
A
244 245anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 166first strand
Strand 2
B
136 141parallel
Strand 3
B
111 115parallel
Strand 4
B
180 183parallel
Strand 5
B
214 217parallel
Strand 6
B
261 264parallel
Strand 7
B
267 269anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
194 197anti-parallel
Strand 3
B
251 254anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
240 241first strand
Strand 2
B
244 245anti-parallel
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