Analysis of interatomic Contacts of Structural Units in PDB entry:
1VBG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VBG entry

There is 1 chain in PDB entry 1VBG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3VAL 876
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 43 helices in PDB entry 1VBG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 37Right-handed alpha
Helix 2
2
A
48 58Right-handed alpha
Helix 3
3
A
65 82Right-handed alpha
Helix 4
4
A
117 129Right-handed alpha
Helix 5
5
A
129 148Right-handed alpha
Helix 6
6
A
152 168Right-handed alpha
Helix 7
7
A
171 175Right-handed 310
Helix 8
8
A
176 196Right-handed alpha
Helix 9
9
A
202 218Right-handed alpha
Helix 10
10
A
220 229Right-handed alpha
Helix 11
11
A
280 287Right-handed alpha
Helix 12
12
A
294 301Right-handed alpha
Helix 13
13
A
301 320Right-handed alpha
Helix 14
14
A
345 359Right-handed alpha
Helix 15
15
A
363 368Right-handed alpha
Helix 16
16
A
369 371Right-handed 310
Helix 17
17
A
372 379Right-handed alpha
Helix 18
18
A
386 391Right-handed 310
Helix 19
19
A
413 423Right-handed alpha
Helix 20
20
A
438 445Right-handed alpha
Helix 21
21
A
457 466Right-handed alpha
Helix 22
22
A
522 535Right-handed alpha
Helix 23
23
A
545 555Right-handed alpha
Helix 24
24
A
565 570Right-handed alpha
Helix 25
25
A
572 585Right-handed alpha
Helix 26
26
A
587 613Right-handed alpha
Helix 27
27
A
626 631Right-handed 310
Helix 28
28
A
635 648Right-handed alpha
Helix 29
29
A
650 662Right-handed alpha
Helix 30
30
A
665 669Right-handed 310
Helix 31
31
A
672 679Right-handed alpha
Helix 32
32
A
679 699Right-handed alpha
Helix 33
33
A
715 738Right-handed alpha
Helix 34
34
A
751 757Right-handed alpha
Helix 35
35
A
757 762Right-handed alpha
Helix 36
36
A
771 781Right-handed alpha
Helix 37
37
A
786 789Right-handed 310
Helix 38
38
A
790 797Right-handed alpha
Helix 39
39
A
812 828Right-handed alpha
Helix 40
40
A
838 841Right-handed 310
Helix 41
41
A
842 852Right-handed alpha
Helix 42
42
A
860 862Right-handed 310
Helix 43
43
A
863 874Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 1VBG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
6 10anti-parallel
Strand 3
A
44 47anti-parallel
Strand 4
A
240 244anti-parallel
Strand 5
A
94 97anti-parallel
Strand 6
A
111 114anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 293first strand
Strand 2
A
272 277anti-parallel
Strand 3
A
255 260anti-parallel
Strand 4
A
323 330anti-parallel
Strand 5
A
333 341anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 397first strand
Strand 2
A
507 510anti-parallel
Strand 3
A
498 502anti-parallel
Strand 4
A
405 411anti-parallel
Strand 5
A
427 431parallel
Strand 6
A
447 450parallel
Strand 7
A
470 472parallel
Strand 8
A
399 402anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 480first strand
Strand 2
A
485 488anti-parallel
Strand 3
A
491 494anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 542first strand
Strand 2
A
560 564parallel
Strand 3
A
617 621parallel
Strand 4
A
705 710parallel
Strand 5
A
744 749parallel
Strand 6
A
767 770parallel
Strand 7
A
832 836parallel
Strand 8
A
856 859parallel
Strand 9
A
538 542parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il