Analysis of interatomic Contacts of Structural Units in PDB entry:
1VBJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VBJ entry

There are 2 chains in PDB entry 1VBJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -4PHE 276
B
 PRO -2PHE 276
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1VBJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
28 42Right-handed alpha
Helix 2
2
A
49 53Right-handed 310
Helix 3
3
A
54 65Right-handed alpha
Helix 4
4
A
68 72Right-handed 310
Helix 5
5
A
79 83Right-handed 310
Helix 6
6
A
84 100Right-handed alpha
Helix 7
7
A
116 130Right-handed alpha
Helix 8
8
A
142 151Right-handed alpha
Helix 9
9
A
170 180Right-handed alpha
Helix 10
10
A
190 194Right-handed 310
Helix 11
11
A
198 207Right-handed alpha
Helix 12
12
A
211 223Right-handed alpha
Helix 13
13
A
233 242Right-handed alpha
Helix 14
14
A
249 258Right-handed alpha
Helix 15
15
B
28 40Right-handed alpha
Helix 16
16
B
49 53Right-handed 310
Helix 17
17
B
54 65Right-handed alpha
Helix 18
18
B
68 72Right-handed 310
Helix 19
19
B
79 83Right-handed 310
Helix 20
20
B
84 99Right-handed alpha
Helix 21
21
B
116 130Right-handed alpha
Helix 22
22
B
142 152Right-handed alpha
Helix 23
23
B
170 180Right-handed alpha
Helix 24
24
B
190 194Right-handed 310
Helix 25
25
B
198 207Right-handed alpha
Helix 26
26
B
211 223Right-handed alpha
Helix 27
27
B
233 242Right-handed alpha
Helix 28
28
B
249 258Right-handed alpha
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There are 4 sheets in PDB entry 1VBJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
14 16anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
45 47parallel
Strand 3
A
73 78parallel
Strand 4
A
106 109parallel
Strand 5
A
136 139parallel
Strand 6
A
159 163parallel
Strand 7
A
183 187parallel
Strand 8
A
226 227parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
14 16anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
45 47parallel
Strand 3
B
73 78parallel
Strand 4
B
104 109parallel
Strand 5
B
133 139parallel
Strand 6
B
159 163parallel
Strand 7
B
183 187parallel
Strand 8
B
226 227parallel
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