Analysis of interatomic Contacts of Structural Units in PDB entry:
1VBK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VBK entry

There are 2 chains in PDB entry 1VBK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 307
B
 MET 1LEU 307
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1VBK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 37Right-handed alpha
Helix 2
2
A
57 66Right-handed alpha
Helix 3
3
A
83 103Right-handed alpha
Helix 4
4
A
123 139Right-handed alpha
Helix 5
5
A
188 201Right-handed alpha
Helix 6
6
A
214 229Right-handed alpha
Helix 7
7
A
243 255Right-handed alpha
Helix 8
8
A
264 268Right-handed 310
Helix 9
9
A
272 282Right-handed alpha
Helix 10
10
A
288 293Right-handed alpha
Helix 11
11
A
294 306Right-handed alpha
Helix 12
12
B
18 37Right-handed alpha
Helix 13
13
B
57 66Right-handed alpha
Helix 14
14
B
83 103Right-handed alpha
Helix 15
15
B
123 137Right-handed alpha
Helix 16
16
B
188 200Right-handed alpha
Helix 17
17
B
216 228Right-handed alpha
Helix 18
18
B
229 231Right-handed 310
Helix 19
19
B
243 254Right-handed alpha
Helix 20
20
B
272 282Right-handed alpha
Helix 21
21
B
288 293Right-handed alpha
Helix 22
22
B
294 306Right-handed alpha
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There are 6 sheets in PDB entry 1VBK. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 47first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
3 8anti-parallel
Strand 4
A
71 81anti-parallel
Strand 5
A
160 164anti-parallel
Strand 6
A
150 157anti-parallel
Strand 7
A
108 115parallel
Strand 8
A
142 143parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 47first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
3 8anti-parallel
Strand 4
A
71 81anti-parallel
Strand 5
A
168 169anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 241first strand
Strand 2
A
204 210parallel
Strand 3
A
181 185parallel
Strand 4
A
258 260parallel
Strand 5
A
286 287parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 47first strand
Strand 2
B
50 54anti-parallel
Strand 3
B
3 7anti-parallel
Strand 4
B
71 81anti-parallel
Strand 5
B
160 164anti-parallel
Strand 6
B
150 157anti-parallel
Strand 7
B
108 115parallel
Strand 8
B
142 143parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 47first strand
Strand 2
B
50 54anti-parallel
Strand 3
B
3 7anti-parallel
Strand 4
B
71 81anti-parallel
Strand 5
B
168 172anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 241first strand
Strand 2
B
204 210parallel
Strand 3
B
181 185parallel
Strand 4
B
259 260parallel
Strand 5
B
286 287parallel
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