Analysis of interatomic Contacts of Structural Units in PDB entry:
1VBL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VBL entry

There is 1 chain in PDB entry 1VBL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1HIS 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 1VBL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 6Right-handed 310
Helix 2
2
A
13 17Right-handed 310
Helix 3
3
A
28 30Right-handed 310
Helix 4
4
A
37 45Right-handed alpha
Helix 5
5
A
50 55Right-handed 310
Helix 6
6
A
79 84Right-handed alpha
Helix 7
7
A
89 98Right-handed alpha
Helix 8
8
A
98 103Right-handed alpha
Helix 9
9
A
109 126Right-handed alpha
Helix 10
10
A
213 217Right-handed 310
Helix 11
11
A
263 267Right-handed 310
Helix 12
12
A
337 340Right-handed 310
Helix 13
13
A
369 378Right-handed alpha
Helix 14
14
A
398 400Right-handed 310
Helix 15
15
A
401 410Right-handed alpha
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There are 6 sheets in PDB entry 1VBL. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
59 63parallel
Strand 3
A
134 138parallel
Strand 4
A
156 161parallel
Strand 5
A
198 203parallel
Strand 6
A
239 244parallel
Strand 7
A
272 275parallel
Strand 8
A
293 297parallel
Strand 9
A
322 326parallel
Strand 10
A
351 355parallel
Strand 11
A
383 384parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
144 146parallel
Strand 3
A
164 166parallel
Strand 4
A
206 208parallel
Strand 5
A
247 253parallel
Strand 6
A
278 284parallel
Strand 7
A
300 303parallel
Strand 8
A
329 332parallel
Strand 9
A
358 361parallel
Strand 10
A
364 367anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 129first strand
Strand 2
A
149 153parallel
Strand 3
A
192 195parallel
Strand 4
A
232 235parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
174 176first strand
Strand 2
A
184 186anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
219 220first strand
Strand 2
A
223 224anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
256 257first strand
Strand 2
A
288 289parallel
Strand 3
A
315 318parallel
Strand 4
A
342 345parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il