Analysis of interatomic Contacts of Structural Units in PDB entry:
1VBM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VBM entry

There are 2 chains in PDB entry 1VBM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 5ARG 322
B
 ASN 5ARG 322
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 1VBM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 14Right-handed alpha
Helix 2
2
A
21 32Right-handed alpha
Helix 3
3
A
48 64Right-handed alpha
Helix 4
4
A
75 79Right-handed 310
Helix 5
5
A
93 109Right-handed alpha
Helix 6
6
A
110 112Right-handed 310
Helix 7
7
A
126 131Right-handed alpha
Helix 8
8
A
134 142Right-handed alpha
Helix 9
9
A
143 146Right-handed 310
Helix 10
10
A
147 153Right-handed alpha
Helix 11
11
A
154 163Right-handed alpha
Helix 12
12
A
169 174Right-handed alpha
Helix 13
13
A
174 191Right-handed alpha
Helix 14
14
A
201 217Right-handed alpha
Helix 15
15
A
252 262Right-handed alpha
Helix 16
16
A
264 276Right-handed alpha
Helix 17
17
A
279 293Right-handed alpha
Helix 18
18
A
298 320Right-handed alpha
Helix 19
19
B
5 13Right-handed alpha
Helix 20
20
B
21 32Right-handed alpha
Helix 21
21
B
48 64Right-handed alpha
Helix 22
22
B
75 80Right-handed alpha
Helix 23
23
B
93 109Right-handed alpha
Helix 24
24
B
110 112Right-handed 310
Helix 25
25
B
126 131Right-handed alpha
Helix 26
26
B
134 142Right-handed alpha
Helix 27
27
B
143 146Right-handed 310
Helix 28
28
B
147 153Right-handed alpha
Helix 29
29
B
154 162Right-handed alpha
Helix 30
30
B
169 174Right-handed alpha
Helix 31
31
B
174 190Right-handed alpha
Helix 32
32
B
201 217Right-handed alpha
Helix 33
33
B
252 262Right-handed alpha
Helix 34
34
B
267 276Right-handed alpha
Helix 35
35
B
279 292Right-handed alpha
Helix 36
36
B
298 321Right-handed alpha
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There are 3 sheets in PDB entry 1VBM. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 19first strand
Strand 2
A
221 225anti-parallel
Strand 3
A
192 198parallel
Strand 4
A
35 40parallel
Strand 5
A
70 72parallel
Strand 6
A
124 125parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
18 19first strand
Strand 2
B
221 225anti-parallel
Strand 3
B
192 198parallel
Strand 4
B
35 40parallel
Strand 5
B
67 72parallel
Strand 6
B
122 125parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 239first strand
Strand 2
B
242 243anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il