Analysis of interatomic Contacts of Structural Units in PDB entry:
1VBR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VBR entry

There are 2 chains in PDB entry 1VBR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 517ARG 840
B
 VAL 517ARG 840
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 1VBR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
518 526Right-handed alpha
Helix 2
2
A
537 541Right-handed 310
Helix 3
3
A
543 555Right-handed alpha
Helix 4
4
A
565 570Right-handed alpha
Helix 5
5
A
578 591Right-handed alpha
Helix 6
6
A
607 612Right-handed alpha
Helix 7
7
A
616 635Right-handed alpha
Helix 8
8
A
658 665Right-handed alpha
Helix 9
9
A
666 680Right-handed alpha
Helix 10
10
A
696 712Right-handed alpha
Helix 11
11
A
731 744Right-handed alpha
Helix 12
12
A
763 784Right-handed alpha
Helix 13
13
A
802 807Right-handed alpha
Helix 14
14
A
823 840Right-handed alpha
Helix 15
15
B
518 526Right-handed alpha
Helix 16
16
B
537 541Right-handed 310
Helix 17
17
B
543 555Right-handed alpha
Helix 18
18
B
565 570Right-handed alpha
Helix 19
19
B
578 591Right-handed alpha
Helix 20
20
B
607 612Right-handed alpha
Helix 21
21
B
616 635Right-handed alpha
Helix 22
22
B
658 665Right-handed alpha
Helix 23
23
B
666 680Right-handed alpha
Helix 24
24
B
696 712Right-handed alpha
Helix 25
25
B
731 744Right-handed alpha
Helix 26
26
B
763 784Right-handed alpha
Helix 27
27
B
802 807Right-handed alpha
Helix 28
28
B
823 840Right-handed alpha
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There are 3 sheets in PDB entry 1VBR. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 11 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 726first strand
Strand 2
A
810 811first strand
Strand 3
A
718 721first strand
Strand 4
A
684 689parallel
Strand 5
A
641 646parallel
Strand 6
A
594 601parallel
Strand 7
A
557 560parallel
Strand 8
A
529 534parallel
Strand 9
A
788 793parallel
Strand 10
A
748 759parallel
Strand 11
A
810 811anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
575 577first strand
Strand 2
B
575 577anti-parallel
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There are 11 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
724 726first strand
Strand 2
B
810 811first strand
Strand 3
B
718 721first strand
Strand 4
B
684 689parallel
Strand 5
B
641 646parallel
Strand 6
B
594 601parallel
Strand 7
B
557 560parallel
Strand 8
B
529 534parallel
Strand 9
B
788 793parallel
Strand 10
B
748 759parallel
Strand 11
B
810 811anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il