Analysis of interatomic Contacts of Structural Units in PDB entry:
1VC2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VC2 entry

There is 1 chain in PDB entry 1VC2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 331
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 1VC2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 23Right-handed alpha
Helix 2
2
A
34 43Right-handed alpha
Helix 3
3
A
76 80Right-handed 310
Helix 4
4
A
99 104Right-handed alpha
Helix 5
5
A
105 110Right-handed 310
Helix 6
6
A
150 163Right-handed alpha
Helix 7
7
A
208 214Right-handed alpha
Helix 8
8
A
217 221Right-handed 310
Helix 9
9
A
250 264Right-handed alpha
Helix 10
10
A
278 282Right-handed 310
Helix 11
11
A
294 296Right-handed 310
Helix 12
12
A
312 329Right-handed alpha
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There are 4 sheets in PDB entry 1VC2. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 57first strand
Strand 2
A
61 64anti-parallel
Strand 3
A
67 72anti-parallel
Strand 4
A
26 30parallel
Strand 5
A
2 6parallel
Strand 6
A
87 92parallel
Strand 7
A
113 116parallel
Strand 8
A
143 145parallel
Strand 9
A
125 126parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
49 50anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 206first strand
Strand 2
A
224 231anti-parallel
Strand 3
A
167 177parallel
Strand 4
A
237 245anti-parallel
Strand 5
A
302 309anti-parallel
Strand 6
A
289 292anti-parallel
Strand 7
A
270 273parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
203 206first strand
Strand 2
A
224 231anti-parallel
Strand 3
A
167 177parallel
Strand 4
A
237 245anti-parallel
Strand 5
A
302 309anti-parallel
Strand 6
A
297 299anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il