Analysis of interatomic Contacts of Structural Units in PDB entry:
1VC4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VC4 entry

There are 2 chains in PDB entry 1VC4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 254
B
 MET 1GLY 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1VC4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 22Right-handed alpha
Helix 2
2
A
36 42Right-handed alpha
Helix 3
3
A
66 77Right-handed alpha
Helix 4
4
A
94 105Right-handed alpha
Helix 5
5
A
117 127Right-handed alpha
Helix 6
6
A
136 140Right-handed alpha
Helix 7
7
A
142 154Right-handed alpha
Helix 8
8
A
163 174Right-handed alpha
Helix 9
9
A
193 205Right-handed alpha
Helix 10
10
A
219 225Right-handed alpha
Helix 11
11
A
236 241Right-handed alpha
Helix 12
12
A
244 254Right-handed alpha
Helix 13
13
B
9 23Right-handed alpha
Helix 14
14
B
36 42Right-handed alpha
Helix 15
15
B
66 77Right-handed alpha
Helix 16
16
B
94 105Right-handed alpha
Helix 17
17
B
118 127Right-handed alpha
Helix 18
18
B
136 140Right-handed alpha
Helix 19
19
B
142 153Right-handed alpha
Helix 20
20
B
163 173Right-handed alpha
Helix 21
21
B
193 205Right-handed alpha
Helix 22
22
B
219 225Right-handed alpha
Helix 23
23
B
236 241Right-handed alpha
Helix 24
24
B
244 254Right-handed alpha
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There are 3 sheets in PDB entry 1VC4. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 52first strand
Strand 2
A
81 85parallel
Strand 3
A
109 112parallel
Strand 4
A
131 135parallel
Strand 5
A
156 161parallel
Strand 6
A
177 181parallel
Strand 7
A
210 214parallel
Strand 8
A
232 235parallel
Strand 9
A
47 52parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 52first strand
Strand 2
B
81 85parallel
Strand 3
B
109 112parallel
Strand 4
B
131 135parallel
Strand 5
B
156 161parallel
Strand 6
B
177 181parallel
Strand 7
B
210 214parallel
Strand 8
B
232 235parallel
Strand 9
B
47 52parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
60 61anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il