Analysis of interatomic Contacts of Structural Units in PDB entry:
1VCB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VCB entry

There are 12 chains in PDB entry 1VCB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 98
B
 MET 17CYS 112
C
 LEU 63GLU 204
D
 MET 1GLU 98
E
 MET 17CYS 112
F
 LEU 63GLU 204
G
 MET 1GLU 98
H
 MET 17CYS 112
I
 LEU 63GLU 204
J
 MET 1GLU 98
K
 MET 17CYS 112
L
 LEU 63GLU 204
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 1VCB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
24 35Right-handed alpha
Helix 2
2
A
39 41Right-handed 310
Helix 3
3
A
69 71Right-handed 310
Helix 4
4
B
33 38Right-handed alpha
Helix 5
5
B
40 45Right-handed alpha
Helix 6
6
B
67 83Right-handed alpha
Helix 7
7
B
97 110Right-handed alpha
Helix 8
8
C
158 167Right-handed alpha
Helix 9
9
C
172 177Right-handed 310
Helix 10
10
C
182 189Right-handed alpha
Helix 11
11
C
194 202Right-handed alpha
Helix 12
12
D
24 35Right-handed alpha
Helix 13
13
D
39 41Right-handed 310
Helix 14
14
D
69 71Right-handed 310
Helix 15
15
E
33 38Right-handed alpha
Helix 16
16
E
40 45Right-handed alpha
Helix 17
17
E
67 83Right-handed alpha
Helix 18
18
E
97 110Right-handed alpha
Helix 19
19
F
158 167Right-handed alpha
Helix 20
20
F
172 177Right-handed 310
Helix 21
21
F
182 189Right-handed alpha
Helix 22
22
F
194 202Right-handed alpha
Helix 23
23
G
24 35Right-handed alpha
Helix 24
24
G
39 41Right-handed 310
Helix 25
25
G
69 71Right-handed 310
Helix 26
26
H
33 38Right-handed alpha
Helix 27
27
H
40 45Right-handed alpha
Helix 28
28
H
67 83Right-handed alpha
Helix 29
29
H
97 110Right-handed alpha
Helix 30
30
I
158 167Right-handed alpha
Helix 31
31
I
172 177Right-handed 310
Helix 32
32
I
182 189Right-handed alpha
Helix 33
33
I
194 202Right-handed alpha
Helix 34
34
J
24 35Right-handed alpha
Helix 35
35
J
39 41Right-handed 310
Helix 36
36
J
69 71Right-handed 310
Helix 37
37
K
33 38Right-handed alpha
Helix 38
38
K
40 45Right-handed alpha
Helix 39
39
K
67 83Right-handed alpha
Helix 40
40
K
97 110Right-handed alpha
Helix 41
41
L
158 167Right-handed alpha
Helix 42
42
L
172 177Right-handed 310
Helix 43
43
L
182 189Right-handed alpha
Helix 44
44
L
194 202Right-handed alpha
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There are 16 sheets in PDB entry 1VCB. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 19first strand
Strand 2
A
2 9anti-parallel
Strand 3
A
73 78parallel
Strand 4
A
43 45anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 32first strand
Strand 2
B
18 22anti-parallel
Strand 3
B
58 61parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
106 112first strand
Strand 2
C
71 78anti-parallel
Strand 3
C
147 151parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 121first strand
Strand 2
C
84 89anti-parallel
Strand 3
C
95 97anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 19first strand
Strand 2
D
2 9anti-parallel
Strand 3
D
73 78parallel
Strand 4
D
43 45anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
28 32first strand
Strand 2
E
18 22anti-parallel
Strand 3
E
58 61parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
106 112first strand
Strand 2
F
71 78anti-parallel
Strand 3
F
147 151parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
116 121first strand
Strand 2
F
84 89anti-parallel
Strand 3
F
95 97anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
12 19first strand
Strand 2
G
2 9anti-parallel
Strand 3
G
73 78parallel
Strand 4
G
43 45anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
28 32first strand
Strand 2
H
18 22anti-parallel
Strand 3
H
58 61parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
106 112first strand
Strand 2
I
71 78anti-parallel
Strand 3
I
147 151parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
I
116 121first strand
Strand 2
I
84 89anti-parallel
Strand 3
I
95 97anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
J
12 19first strand
Strand 2
J
2 9anti-parallel
Strand 3
J
73 78parallel
Strand 4
J
43 45anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
28 32first strand
Strand 2
K
18 22anti-parallel
Strand 3
K
58 61parallel
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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
106 112first strand
Strand 2
L
71 78anti-parallel
Strand 3
L
147 151parallel
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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
116 121first strand
Strand 2
L
84 89anti-parallel
Strand 3
L
95 97anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il