Analysis of interatomic Contacts of Structural Units in PDB entry:
1VCE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VCE entry

There are 2 chains in PDB entry 1VCE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1VAL 265
B
 MSE 1VAL 265
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1VCE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 16Right-handed 310
Helix 2
2
A
17 27Right-handed alpha
Helix 3
3
A
43 52Right-handed alpha
Helix 4
4
A
59 71Right-handed alpha
Helix 5
5
A
71 76Right-handed alpha
Helix 6
6
A
94 104Right-handed alpha
Helix 7
7
A
115 120Right-handed alpha
Helix 8
8
A
121 124Right-handed 310
Helix 9
9
A
126 130Right-handed 310
Helix 10
10
A
146 158Right-handed alpha
Helix 11
11
A
170 173Right-handed 310
Helix 12
12
A
177 193Right-handed alpha
Helix 13
13
A
221 225Right-handed alpha
Helix 14
14
A
243 253Right-handed alpha
Helix 15
15
A
257 262Right-handed 310
Helix 16
16
B
12 16Right-handed 310
Helix 17
17
B
17 27Right-handed alpha
Helix 18
18
B
43 52Right-handed alpha
Helix 19
19
B
59 71Right-handed alpha
Helix 20
20
B
71 76Right-handed alpha
Helix 21
21
B
93 104Right-handed alpha
Helix 22
22
B
115 120Right-handed alpha
Helix 23
23
B
121 124Right-handed 310
Helix 24
24
B
126 130Right-handed 310
Helix 25
25
B
146 158Right-handed alpha
Helix 26
26
B
177 193Right-handed alpha
Helix 27
27
B
221 225Right-handed alpha
Helix 28
28
B
243 254Right-handed alpha
Helix 29
29
B
259 264Right-handed alpha
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There are 6 sheets in PDB entry 1VCE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
29 33parallel
Strand 3
A
79 84parallel
Strand 4
A
2 7parallel
Strand 5
A
108 111parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 136first strand
Strand 2
A
162 166parallel
Strand 3
A
234 238anti-parallel
Strand 4
A
202 207anti-parallel
Strand 5
A
215 220anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 169first strand
Strand 2
A
174 175anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 58first strand
Strand 2
B
29 33parallel
Strand 3
B
79 84parallel
Strand 4
B
2 7parallel
Strand 5
B
107 111parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
162 166parallel
Strand 3
B
234 238anti-parallel
Strand 4
B
202 207anti-parallel
Strand 5
B
215 220anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 169first strand
Strand 2
B
174 175anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il