Analysis of interatomic Contacts of Structural Units in PDB entry:
1VCF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VCF entry

There are 2 chains in PDB entry 1VCF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 23VAL 332
B
 LYS 23VAL 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 1VCF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 29Right-handed 310
Helix 2
2
A
42 46Right-handed 310
Helix 3
3
A
72 88Right-handed alpha
Helix 4
4
A
96 102Right-handed alpha
Helix 5
5
A
105 110Right-handed alpha
Helix 6
6
A
127 131Right-handed 310
Helix 7
7
A
133 145Right-handed alpha
Helix 8
8
A
154 161Right-handed alpha
Helix 9
9
A
169 178Right-handed alpha
Helix 10
10
A
194 202Right-handed alpha
Helix 11
11
A
218 225Right-handed alpha
Helix 12
12
A
242 254Right-handed alpha
Helix 13
13
A
267 278Right-handed alpha
Helix 14
14
A
285 287Right-handed 310
Helix 15
15
A
288 293Right-handed alpha
Helix 16
16
A
295 318Right-handed alpha
Helix 17
17
A
321 326Right-handed 310
Helix 18
18
B
27 29Right-handed 310
Helix 19
19
B
42 46Right-handed 310
Helix 20
20
B
72 88Right-handed alpha
Helix 21
21
B
96 102Right-handed alpha
Helix 22
22
B
105 110Right-handed alpha
Helix 23
23
B
127 131Right-handed 310
Helix 24
24
B
133 145Right-handed alpha
Helix 25
25
B
154 161Right-handed alpha
Helix 26
26
B
169 178Right-handed alpha
Helix 27
27
B
194 202Right-handed alpha
Helix 28
28
B
242 254Right-handed alpha
Helix 29
29
B
267 278Right-handed alpha
Helix 30
30
B
285 287Right-handed 310
Helix 31
31
B
288 293Right-handed alpha
Helix 32
32
B
295 318Right-handed alpha
Helix 33
33
B
321 326Right-handed 310
Back to top of page

There are 6 sheets in PDB entry 1VCF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
329 331anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 52first strand
Strand 2
A
55 57anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
90 95parallel
Strand 3
A
120 125parallel
Strand 4
A
148 152parallel
Strand 5
A
184 187parallel
Strand 6
A
208 210parallel
Strand 7
A
259 262parallel
Strand 8
A
281 284parallel
Strand 9
A
61 63parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
329 331anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 52first strand
Strand 2
B
55 57anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
90 95parallel
Strand 3
B
120 125parallel
Strand 4
B
148 152parallel
Strand 5
B
184 187parallel
Strand 6
B
208 210parallel
Strand 7
B
259 262parallel
Strand 8
B
281 284parallel
Strand 9
B
61 63parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il