Analysis of interatomic Contacts of Structural Units in PDB entry:
1VCG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VCG entry

There are 4 chains in PDB entry 1VCG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 9VAL 332
B
 LYS 9VAL 332
C
 LYS 9VAL 332
D
 LYS 9VAL 332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 1VCG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 17Right-handed alpha
Helix 2
2
A
27 29Right-handed 310
Helix 3
3
A
42 46Right-handed 310
Helix 4
4
A
74 88Right-handed alpha
Helix 5
5
A
97 100Right-handed 310
Helix 6
6
A
125 131Right-handed 310
Helix 7
7
A
133 145Right-handed alpha
Helix 8
8
A
154 162Right-handed alpha
Helix 9
9
A
169 177Right-handed alpha
Helix 10
10
A
194 200Right-handed alpha
Helix 11
11
A
218 229Right-handed alpha
Helix 12
12
A
233 238Right-handed alpha
Helix 13
13
A
242 254Right-handed alpha
Helix 14
14
A
267 277Right-handed alpha
Helix 15
15
A
285 295Right-handed alpha
Helix 16
16
A
295 318Right-handed alpha
Helix 17
17
B
9 17Right-handed alpha
Helix 18
18
B
27 29Right-handed 310
Helix 19
19
B
42 46Right-handed 310
Helix 20
20
B
74 88Right-handed alpha
Helix 21
21
B
97 100Right-handed 310
Helix 22
22
B
102 109Right-handed 310
Helix 23
23
B
125 131Right-handed 310
Helix 24
24
B
133 145Right-handed alpha
Helix 25
25
B
154 162Right-handed alpha
Helix 26
26
B
169 177Right-handed alpha
Helix 27
27
B
194 200Right-handed alpha
Helix 28
28
B
218 229Right-handed alpha
Helix 29
29
B
233 238Right-handed alpha
Helix 30
30
B
242 254Right-handed alpha
Helix 31
31
B
267 277Right-handed alpha
Helix 32
32
B
285 295Right-handed alpha
Helix 33
33
B
295 318Right-handed alpha
Helix 34
34
B
321 326Right-handed 310
Helix 35
35
C
9 17Right-handed alpha
Helix 36
36
C
27 29Right-handed 310
Helix 37
37
C
42 46Right-handed 310
Helix 38
38
C
74 88Right-handed alpha
Helix 39
39
C
97 100Right-handed 310
Helix 40
40
C
102 106Right-handed 310
Helix 41
41
C
125 131Right-handed 310
Helix 42
42
C
133 145Right-handed alpha
Helix 43
43
C
154 162Right-handed alpha
Helix 44
44
C
169 177Right-handed alpha
Helix 45
45
C
194 200Right-handed alpha
Helix 46
46
C
218 229Right-handed alpha
Helix 47
47
C
233 238Right-handed alpha
Helix 48
48
C
242 254Right-handed alpha
Helix 49
49
C
267 277Right-handed alpha
Helix 50
50
C
285 295Right-handed alpha
Helix 51
51
C
295 318Right-handed alpha
Helix 52
52
D
9 17Right-handed alpha
Helix 53
53
D
27 29Right-handed 310
Helix 54
54
D
42 46Right-handed 310
Helix 55
55
D
74 88Right-handed alpha
Helix 56
56
D
97 100Right-handed 310
Helix 57
57
D
125 131Right-handed 310
Helix 58
58
D
133 145Right-handed alpha
Helix 59
59
D
154 162Right-handed alpha
Helix 60
60
D
169 177Right-handed alpha
Helix 61
61
D
194 200Right-handed alpha
Helix 62
62
D
218 229Right-handed alpha
Helix 63
63
D
233 238Right-handed alpha
Helix 64
64
D
242 254Right-handed alpha
Helix 65
65
D
267 277Right-handed alpha
Helix 66
66
D
285 295Right-handed alpha
Helix 67
67
D
295 318Right-handed alpha
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There are 12 sheets in PDB entry 1VCG. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
329 331anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
56 57anti-parallel
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There are 9 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 66first strand
Strand 2
A
90 95parallel
Strand 3
A
120 123parallel
Strand 4
A
148 152parallel
Strand 5
A
184 187parallel
Strand 6
A
208 210parallel
Strand 7
A
259 262parallel
Strand 8
A
281 284parallel
Strand 9
A
61 66parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
329 331anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 51first strand
Strand 2
B
56 57anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 66first strand
Strand 2
B
90 95parallel
Strand 3
B
120 123parallel
Strand 4
B
148 152parallel
Strand 5
B
184 187parallel
Strand 6
B
208 210parallel
Strand 7
B
259 262parallel
Strand 8
B
281 284parallel
Strand 9
B
61 66parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
31 33first strand
Strand 2
C
329 331anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
50 51first strand
Strand 2
C
56 57anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
61 66first strand
Strand 2
C
90 95parallel
Strand 3
C
120 123parallel
Strand 4
C
148 152parallel
Strand 5
C
184 187parallel
Strand 6
C
208 210parallel
Strand 7
C
259 262parallel
Strand 8
C
281 284parallel
Strand 9
C
61 66parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
31 33first strand
Strand 2
D
329 331anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
50 51first strand
Strand 2
D
56 57anti-parallel
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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
61 66first strand
Strand 2
D
90 95parallel
Strand 3
D
120 123parallel
Strand 4
D
148 152parallel
Strand 5
D
184 187parallel
Strand 6
D
208 210parallel
Strand 7
D
259 262parallel
Strand 8
D
281 284parallel
Strand 9
D
61 66parallel
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