Analysis of interatomic Contacts of Structural Units in PDB entry:
1VCH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VCH entry

There are 5 chains in PDB entry 1VCH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2LEU 175
B
 MET 1LEU 175
C
 MET 1LEU 175
D
 MET 1LEU 175
E
 GLU 2LEU 175
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 1VCH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 46Right-handed alpha
Helix 2
2
A
47 49Right-handed 310
Helix 3
3
A
62 75Right-handed alpha
Helix 4
4
A
111 119Right-handed alpha
Helix 5
5
A
133 146Right-handed alpha
Helix 6
6
B
34 46Right-handed alpha
Helix 7
7
B
47 49Right-handed 310
Helix 8
8
B
62 75Right-handed alpha
Helix 9
9
B
111 116Right-handed alpha
Helix 10
10
B
133 147Right-handed alpha
Helix 11
11
C
34 46Right-handed alpha
Helix 12
12
C
47 49Right-handed 310
Helix 13
13
C
62 75Right-handed alpha
Helix 14
14
C
111 117Right-handed alpha
Helix 15
15
C
133 146Right-handed alpha
Helix 16
16
D
34 46Right-handed alpha
Helix 17
17
D
47 49Right-handed 310
Helix 18
18
D
62 75Right-handed alpha
Helix 19
19
D
111 117Right-handed alpha
Helix 20
20
D
133 146Right-handed alpha
Helix 21
21
E
35 46Right-handed alpha
Helix 22
22
E
47 49Right-handed 310
Helix 23
23
E
62 72Right-handed alpha
Helix 24
24
E
111 117Right-handed alpha
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There are 16 sheets in PDB entry 1VCH. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 8first strand
Strand 2
A
11 15anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 21first strand
Strand 2
A
24 27anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
55 59parallel
Strand 3
A
122 130parallel
Strand 4
A
149 158parallel
Strand 5
A
167 171parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
107 110anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 8first strand
Strand 2
B
11 21anti-parallel
Strand 3
B
24 27anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
78 81first strand
Strand 2
B
55 59parallel
Strand 3
B
122 130parallel
Strand 4
B
149 159parallel
Strand 5
B
167 172parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 96first strand
Strand 2
B
107 110anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 8first strand
Strand 2
C
11 21anti-parallel
Strand 3
C
24 27anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
78 81first strand
Strand 2
C
55 59parallel
Strand 3
C
122 130parallel
Strand 4
C
149 159parallel
Strand 5
C
167 172parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
93 96first strand
Strand 2
C
107 110anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 8first strand
Strand 2
D
11 21anti-parallel
Strand 3
D
24 27anti-parallel
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There are 5 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
78 81first strand
Strand 2
D
55 59parallel
Strand 3
D
122 130parallel
Strand 4
D
149 159parallel
Strand 5
D
167 172parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
93 96first strand
Strand 2
D
107 110anti-parallel
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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 8first strand
Strand 2
E
11 21anti-parallel
Strand 3
E
24 27anti-parallel
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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
78 81first strand
Strand 2
E
55 59parallel
Strand 3
E
123 130parallel
Strand 4
E
154 158parallel
Strand 5
E
167 168parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
93 95first strand
Strand 2
E
108 110anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il