Analysis of interatomic Contacts of Structural Units in PDB entry:
1VCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VCP entry

There are 3 chains in PDB entry 1VCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 119TRP 267
B
 CYS 119TRP 267
C
 CYS 119TRP 267
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 1VCP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
A1
A
153 156Right-handed alpha
Helix 2
A2
A
175 180Right-handed 310
Helix 3
B1
B
153 156Right-handed alpha
Helix 4
B2
B
175 180Right-handed 310
Helix 5
C1
C
153 156Right-handed alpha
Helix 6
C2
C
175 180Right-handed 310
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There are 9 sheets in PDB entry 1VCP. Click on sheet of interest to get list of strands forming it: A1, A2, A3, B1, B2, B3, C1, C2, C3,

There are 6 strands in A1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 150first strand
Strand 2
A
119 125anti-parallel
Strand 3
A
128 136anti-parallel
Strand 4
A
139 143anti-parallel
Strand 5
A
168 172anti-parallel
Strand 6
A
160 163anti-parallel
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There are 7 strands in A2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 195first strand
Strand 2
A
198 202anti-parallel
Strand 3
A
207 210anti-parallel
Strand 4
A
243 252anti-parallel
Strand 5
A
230 239anti-parallel
Strand 6
A
222 224anti-parallel
Strand 7
A
191 195anti-parallel
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There are 2 strands in A3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
243 252first strand
Strand 2
A
255 259anti-parallel
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There are 6 strands in B1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
149 150first strand
Strand 2
B
119 125anti-parallel
Strand 3
B
128 136anti-parallel
Strand 4
B
139 143anti-parallel
Strand 5
B
168 172anti-parallel
Strand 6
B
160 163anti-parallel
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There are 7 strands in B2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 195first strand
Strand 2
B
198 202anti-parallel
Strand 3
B
207 210anti-parallel
Strand 4
B
243 252anti-parallel
Strand 5
B
230 239anti-parallel
Strand 6
B
222 224anti-parallel
Strand 7
B
191 195anti-parallel
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There are 2 strands in B3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 252first strand
Strand 2
B
255 259anti-parallel
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There are 6 strands in C1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
149 150first strand
Strand 2
C
119 125anti-parallel
Strand 3
C
128 136anti-parallel
Strand 4
C
139 143anti-parallel
Strand 5
C
168 172anti-parallel
Strand 6
C
160 163anti-parallel
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There are 7 strands in C2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
191 195first strand
Strand 2
C
198 202anti-parallel
Strand 3
C
207 210anti-parallel
Strand 4
C
243 252anti-parallel
Strand 5
C
230 239anti-parallel
Strand 6
C
222 224anti-parallel
Strand 7
C
191 195anti-parallel
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There are 2 strands in C3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
243 252first strand
Strand 2
C
255 259anti-parallel
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