Analysis of interatomic Contacts of Structural Units in PDB entry:
1VCU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VCU entry

There are 2 chains in PDB entry 1VCU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1TYR 377
B
MET 1TYR 377
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1VCU. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
45 49Right-handed 310
Helix 2
2
A
110 118Right-handed alpha
Helix 3
3
A
142 147Right-handed alpha
Helix 4
4
A
148 152Right-handed 310
Helix 5
5
A
317 321Right-handed 310
Helix 6
6
A
369 373Right-handed alpha
Helix 7
7
A
374 377Right-handed 310
Helix 8
8
B
45 47Right-handed 310
Helix 9
9
B
110 117Right-handed alpha
Helix 10
10
B
142 147Right-handed alpha
Helix 11
11
B
148 152Right-handed 310
Helix 12
12
B
317 321Right-handed 310
Helix 13
13
B
369 373Right-handed alpha
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There are 15 sheets in PDB entry 1VCU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
8 14first strand
Strand 2
A
361 368anti-parallel
Strand 3
A
348 356anti-parallel
Strand 4
A
332 342anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
19 28first strand
Strand 2
A
33 41anti-parallel
Strand 3
A
51 60anti-parallel
Strand 4
A
65 68anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
19 28first strand
Strand 2
A
33 41anti-parallel
Strand 3
A
51 60anti-parallel
Strand 4
A
72 73anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
82 92first strand
Strand 2
A
97 106anti-parallel
Strand 3
A
123 129anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
154 159first strand
Strand 2
A
174 182anti-parallel
Strand 3
A
165 166anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
154 159first strand
Strand 2
A
174 182anti-parallel
Strand 3
A
191 199anti-parallel
Strand 4
A
207 208anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
219 224first strand
Strand 2
A
231 236anti-parallel
Strand 3
A
242 248anti-parallel
Strand 4
A
257 265anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
275 280first strand
Strand 2
A
291 298anti-parallel
Strand 3
A
307 312anti-parallel
Strand 4
A
325 326anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
8 14first strand
Strand 2
B
361 368anti-parallel
Strand 3
B
348 356anti-parallel
Strand 4
B
325 342anti-parallel
Strand 5
B
305 312anti-parallel
Strand 6
B
291 298anti-parallel
Strand 7
B
275 280anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
19 28first strand
Strand 2
B
33 41anti-parallel
Strand 3
B
49 60anti-parallel
Strand 4
B
65 68anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
19 28first strand
Strand 2
B
33 41anti-parallel
Strand 3
B
49 60anti-parallel
Strand 4
B
72 73anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
82 91first strand
Strand 2
B
98 106anti-parallel
Strand 3
B
123 129anti-parallel
Strand 4
B
140 141anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
154 159first strand
Strand 2
B
174 182anti-parallel
Strand 3
B
165 166anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
154 159first strand
Strand 2
B
174 182anti-parallel
Strand 3
B
191 199anti-parallel
Strand 4
B
207 208anti-parallel
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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
219 226first strand
Strand 2
B
229 236anti-parallel
Strand 3
B
242 248anti-parallel
Strand 4
B
259 265anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il