Analysis of interatomic Contacts of Structural Units in PDB entry:
1VCW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VCW entry

There are 3 chains in PDB entry 1VCW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 42ALA 353
B
 MET 42ALA 353
C
 MET 42ALA 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 1VCW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
47 55Right-handed alpha
Helix 2
2
A
95 99Right-handed alpha
Helix 3
3
A
160 164Right-handed 310
Helix 4
4
A
238 252Right-handed alpha
Helix 5
5
A
293 297Right-handed 310
Helix 6
6
A
315 323Right-handed alpha
Helix 7
7
B
47 55Right-handed alpha
Helix 8
8
B
95 99Right-handed alpha
Helix 9
9
B
123 125Right-handed 310
Helix 10
10
B
160 164Right-handed 310
Helix 11
11
B
238 252Right-handed alpha
Helix 12
12
B
293 297Right-handed 310
Helix 13
13
B
315 323Right-handed alpha
Helix 14
14
C
47 55Right-handed alpha
Helix 15
15
C
95 99Right-handed alpha
Helix 16
16
C
160 164Right-handed 310
Helix 17
17
C
238 252Right-handed alpha
Helix 18
18
C
293 297Right-handed 310
Helix 19
19
C
315 323Right-handed alpha
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There are 18 sheets in PDB entry 1VCW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 115first strand
Strand 2
A
103 107anti-parallel
Strand 3
A
58 65anti-parallel
Strand 4
A
75 84anti-parallel
Strand 5
A
90 94anti-parallel
Strand 6
A
127 131anti-parallel
Strand 7
A
117 121anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 159first strand
Strand 2
A
167 175anti-parallel
Strand 3
A
190 192anti-parallel
Strand 4
A
233 237anti-parallel
Strand 5
A
212 219anti-parallel
Strand 6
A
204 207anti-parallel
Strand 7
A
154 159anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 258first strand
Strand 2
A
349 350anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
282 285first strand
Strand 2
A
301 304anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
306 307first strand
Strand 2
A
310 311anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 333first strand
Strand 2
A
344 347anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
58 65anti-parallel
Strand 3
B
103 107anti-parallel
Strand 4
B
113 115anti-parallel
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There are 6 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 76first strand
Strand 2
B
58 65anti-parallel
Strand 3
B
80 84anti-parallel
Strand 4
B
90 94anti-parallel
Strand 5
B
127 131anti-parallel
Strand 6
B
120 121anti-parallel
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There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 159first strand
Strand 2
B
167 175anti-parallel
Strand 3
B
190 192anti-parallel
Strand 4
B
233 237anti-parallel
Strand 5
B
212 216anti-parallel
Strand 6
B
204 207anti-parallel
Strand 7
B
154 159anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 258first strand
Strand 2
B
349 350anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
282 284first strand
Strand 2
B
302 304anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
306 307first strand
Strand 2
B
310 311anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
330 333first strand
Strand 2
B
344 347anti-parallel
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There are 7 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 115first strand
Strand 2
C
103 107anti-parallel
Strand 3
C
58 65anti-parallel
Strand 4
C
75 86anti-parallel
Strand 5
C
90 94anti-parallel
Strand 6
C
127 131anti-parallel
Strand 7
C
117 122anti-parallel
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There are 7 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
154 159first strand
Strand 2
C
167 175anti-parallel
Strand 3
C
190 192anti-parallel
Strand 4
C
233 237anti-parallel
Strand 5
C
212 216anti-parallel
Strand 6
C
204 207anti-parallel
Strand 7
C
154 159anti-parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
257 258first strand
Strand 2
C
349 350anti-parallel
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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
282 285first strand
Strand 2
C
301 304anti-parallel
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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
330 333first strand
Strand 2
C
344 347anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il