Analysis of interatomic Contacts of Structural Units in PDB entry:
1VDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VDC entry

There is 1 chain in PDB entry 1VDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1ILE 316
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 1VDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
15 26Right-handed alpha
Helix 2
2
A
36 36Right-handed 310
Helix 3
3
A
42 45Right-handed 310
Helix 4
4
A
61 74Right-handed alpha
Helix 5
5
A
136 139Right-handed alpha
Helix 6
6
A
141 143Right-handed 310
Helix 7
7
A
155 166Right-handed alpha
Helix 8
8
A
184 191Right-handed alpha
Helix 9
9
A
250 252Right-handed 310
Helix 10
10
A
285 288Right-handed 310
Helix 11
11
A
295 314Right-handed alpha
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There are 5 sheets in PDB entry 1VDC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 6first strand
Strand 2
A
101 105parallel
Strand 3
A
94 97anti-parallel
Strand 4
A
86 88anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 80first strand
Strand 2
A
32 34parallel
Strand 3
A
8 11parallel
Strand 4
A
107 110parallel
Strand 5
A
281 283parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 116first strand
Strand 2
A
245 247anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 241first strand
Strand 2
A
147 151parallel
Strand 3
A
170 174parallel
Strand 4
A
196 199parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 235first strand
Strand 2
A
220 225anti-parallel
Strand 3
A
202 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il