Analysis of interatomic Contacts of Structural Units in PDB entry:
1VDP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VDP entry

There are 2 chains in PDB entry 1VDP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 1LEU 129
B
 LYS 201LEU 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1VDP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
4 15Right-handed alpha
Helix 2
2
A
19 23Right-handed 310
Helix 3
3
A
24 37Right-handed alpha
Helix 4
4
A
79 85Right-handed 310
Helix 5
5
A
88 100Right-handed alpha
Helix 6
6
A
103 107Right-handed 310
Helix 7
7
A
108 115Right-handed alpha
Helix 8
8
A
119 125Right-handed 310
Helix 9
9
B
204 215Right-handed alpha
Helix 10
10
B
219 223Right-handed 310
Helix 11
11
B
224 237Right-handed alpha
Helix 12
12
B
279 285Right-handed 310
Helix 13
13
B
288 300Right-handed alpha
Helix 14
14
B
303 307Right-handed 310
Helix 15
15
B
308 315Right-handed alpha
Helix 16
16
B
319 325Right-handed 310
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There are 2 sheets in PDB entry 1VDP. Click on sheet of interest to get list of strands forming it: A, B,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 45first strand
Strand 2
A
51 53anti-parallel
Strand 3
A
58 59anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
243 245first strand
Strand 2
B
251 253anti-parallel
Strand 3
B
258 259anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il