Analysis of interatomic Contacts of Structural Units in PDB entry:
1VDV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 1VDV entry

There are 2 chains in PDB entry 1VDV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 3	VAL 1332
B	ALA 3	VAL 1332

There are106 helices in PDB entry 1VDV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	25	33	Right-handed alpha
Helix 2	2	A	76	80	Right-handed 310
Helix 3	3	A	87	91	Right-handed 310
Helix 4	4	A	99	108	Right-handed alpha
Helix 5	5	A	116	131	Right-handed alpha
Helix 6	6	A	135	142	Right-handed alpha
Helix 7	7	A	153	161	Right-handed alpha
Helix 8	8	A	162	164	Right-handed 310
Helix 9	9	A	197	201	Right-handed 310
Helix 10	10	A	205	209	Right-handed 310
Helix 11	11	A	213	220	Right-handed alpha
Helix 12	12	A	241	252	Right-handed alpha
Helix 13	13	A	263	271	Right-handed alpha
Helix 14	14	A	284	288	Right-handed 310
Helix 15	15	A	304	319	Right-handed alpha
Helix 16	16	A	320	323	Right-handed 310
Helix 17	17	A	324	336	Right-handed alpha
Helix 18	18	A	339	344	Right-handed alpha
Helix 19	19	A	347	355	Right-handed alpha
Helix 20	20	A	361	369	Right-handed alpha
Helix 21	21	A	386	390	Right-handed 310
Helix 22	22	A	466	472	Right-handed alpha
Helix 23	23	A	479	494	Right-handed alpha
Helix 24	24	A	504	528	Right-handed alpha
Helix 25	25	A	542	547	Right-handed 310
Helix 26	26	A	581	587	Right-handed alpha
Helix 27	27	A	592	596	Right-handed 310
Helix 28	28	A	624	628	Right-handed 310
Helix 29	29	A	638	640	Right-handed 310
Helix 30	30	A	674	684	Right-handed alpha
Helix 31	31	A	697	705	Right-handed alpha
Helix 32	32	A	718	726	Right-handed alpha
Helix 33	33	A	768	781	Right-handed alpha
Helix 34	34	A	783	785	Right-handed 310
Helix 35	35	A	805	820	Right-handed alpha
Helix 36	36	A	828	836	Right-handed alpha
Helix 37	37	A	873	884	Right-handed alpha
Helix 38	38	A	915	935	Right-handed alpha
Helix 39	39	A	937	946	Right-handed alpha
Helix 40	40	A	963	976	Right-handed alpha
Helix 41	41	A	976	991	Right-handed alpha
Helix 42	42	A	1011	1014	Right-handed 310
Helix 43	43	A	1041	1055	Right-handed alpha
Helix 44	44	A	1057	1059	Right-handed 310
Helix 45	45	A	1081	1108	Right-handed alpha
Helix 46	46	A	1112	1123	Right-handed alpha
Helix 47	47	A	1187	1208	Right-handed alpha
Helix 48	48	A	1231	1235	Right-handed 310
Helix 49	49	A	1252	1256	Right-handed 310
Helix 50	50	A	1263	1266	Right-handed 310
Helix 51	51	A	1267	1286	Right-handed alpha
Helix 52	52	A	1301	1309	Right-handed alpha
Helix 53	53	A	1311	1318	Right-handed alpha
Helix 54	54	B	25	33	Right-handed alpha
Helix 55	55	B	76	80	Right-handed 310
Helix 56	56	B	87	91	Right-handed 310
Helix 57	57	B	99	108	Right-handed alpha
Helix 58	58	B	116	131	Right-handed alpha
Helix 59	59	B	135	142	Right-handed alpha
Helix 60	60	B	153	161	Right-handed alpha
Helix 61	61	B	162	164	Right-handed 310
Helix 62	62	B	197	201	Right-handed 310
Helix 63	63	B	205	209	Right-handed 310
Helix 64	64	B	213	220	Right-handed alpha
Helix 65	65	B	241	252	Right-handed alpha
Helix 66	66	B	263	271	Right-handed alpha
Helix 67	67	B	284	288	Right-handed 310
Helix 68	68	B	304	319	Right-handed alpha
Helix 69	69	B	320	323	Right-handed 310
Helix 70	70	B	324	336	Right-handed alpha
Helix 71	71	B	339	346	Right-handed alpha
Helix 72	72	B	347	355	Right-handed alpha
Helix 73	73	B	361	369	Right-handed alpha
Helix 74	74	B	386	390	Right-handed 310
Helix 75	75	B	466	472	Right-handed alpha
Helix 76	76	B	479	494	Right-handed alpha
Helix 77	77	B	504	528	Right-handed alpha
Helix 78	78	B	542	547	Right-handed 310
Helix 79	79	B	581	587	Right-handed alpha
Helix 80	80	B	592	596	Right-handed 310
Helix 81	81	B	624	628	Right-handed 310
Helix 82	82	B	638	640	Right-handed 310
Helix 83	83	B	674	684	Right-handed alpha
Helix 84	84	B	697	704	Right-handed alpha
Helix 85	85	B	718	726	Right-handed alpha
Helix 86	86	B	768	781	Right-handed alpha
Helix 87	87	B	783	785	Right-handed 310
Helix 88	88	B	805	820	Right-handed alpha
Helix 89	89	B	828	836	Right-handed alpha
Helix 90	90	B	873	884	Right-handed alpha
Helix 91	91	B	915	935	Right-handed alpha
Helix 92	92	B	937	946	Right-handed alpha
Helix 93	93	B	963	975	Right-handed alpha
Helix 94	94	B	976	991	Right-handed alpha
Helix 95	95	B	1011	1014	Right-handed 310
Helix 96	96	B	1041	1055	Right-handed alpha
Helix 97	97	B	1057	1059	Right-handed 310
Helix 98	98	B	1081	1108	Right-handed alpha
Helix 99	99	B	1112	1123	Right-handed alpha
Helix 100	100	B	1187	1208	Right-handed alpha
Helix 101	101	B	1231	1235	Right-handed 310
Helix 102	102	B	1252	1256	Right-handed 310
Helix 103	103	B	1263	1266	Right-handed 310
Helix 104	104	B	1267	1286	Right-handed alpha
Helix 105	105	B	1301	1309	Right-handed alpha
Helix 106	106	B	1311	1318	Right-handed alpha

There are 20 sheets in PDB entry 1VDV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	17	first strand
Strand 2	A	6	10	anti-parallel
Strand 3	A	84	86	parallel
Strand 4	A	52	59	anti-parallel
Strand 5	A	64	71	anti-parallel

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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	230	first strand
Strand 2	A	235	238	anti-parallel
Strand 3	A	277	280	parallel
Strand 4	A	256	257	parallel

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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	290	292	first strand
Strand 2	A	296	300	anti-parallel
Strand 3	A	403	410	anti-parallel
Strand 4	A	371	376	anti-parallel
Strand 5	A	379	384	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	416	423	first strand
Strand 2	A	434	442	anti-parallel
Strand 3	A	449	457	anti-parallel
Strand 4	A	464	465	anti-parallel

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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	555	559	first strand
Strand 2	A	1238	1243	parallel
Strand 3	A	1171	1181	parallel
Strand 4	A	1152	1165	anti-parallel
Strand 5	A	994	1007	anti-parallel

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There are 8 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	631	636	first strand
Strand 2	A	666	672	anti-parallel
Strand 3	A	603	609	anti-parallel
Strand 4	A	823	826	parallel
Strand 5	A	748	753	anti-parallel
Strand 6	A	760	764	anti-parallel
Strand 7	A	787	791	parallel
Strand 8	A	1066	1067	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	659	660	first strand
Strand 2	A	615	621	anti-parallel
Strand 3	A	686	691	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	645	646	first strand
Strand 2	A	652	653	anti-parallel

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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	707	716	first strand
Strand 2	A	894	901	anti-parallel
Strand 3	A	856	866	parallel
Strand 4	A	842	850	anti-parallel
Strand 5	A	728	736	anti-parallel

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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1061	1062	first strand
Strand 2	A	1029	1033	parallel
Strand 3	A	1016	1023	anti-parallel
Strand 4	A	1128	1134	anti-parallel

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There are 5 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	17	first strand
Strand 2	B	6	10	anti-parallel
Strand 3	B	84	86	parallel
Strand 4	B	52	59	anti-parallel
Strand 5	B	64	71	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	230	first strand
Strand 2	B	235	238	anti-parallel
Strand 3	B	277	280	parallel
Strand 4	B	256	257	parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	290	292	first strand
Strand 2	B	296	300	anti-parallel
Strand 3	B	403	410	anti-parallel
Strand 4	B	371	376	anti-parallel
Strand 5	B	379	384	anti-parallel

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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	416	423	first strand
Strand 2	B	434	442	anti-parallel
Strand 3	B	449	457	anti-parallel
Strand 4	B	464	465	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	555	559	first strand
Strand 2	B	1238	1243	parallel
Strand 3	B	1171	1181	parallel
Strand 4	B	1152	1165	anti-parallel
Strand 5	B	994	1007	anti-parallel

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There are 8 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	631	636	first strand
Strand 2	B	666	672	anti-parallel
Strand 3	B	603	609	anti-parallel
Strand 4	B	823	826	parallel
Strand 5	B	748	753	anti-parallel
Strand 6	B	760	764	anti-parallel
Strand 7	B	787	791	parallel
Strand 8	B	1066	1067	anti-parallel

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There are 3 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	659	660	first strand
Strand 2	B	615	621	anti-parallel
Strand 3	B	686	691	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	645	646	first strand
Strand 2	B	652	653	anti-parallel

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There are 5 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	716	first strand
Strand 2	B	893	901	anti-parallel
Strand 3	B	856	866	parallel
Strand 4	B	842	850	anti-parallel
Strand 5	B	728	736	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1061	1062	first strand
Strand 2	B	1029	1033	parallel
Strand 3	B	1016	1023	anti-parallel
Strand 4	B	1128	1134	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 1VDV

Analysis of interatomic Contacts of Structural Units in PDB entry:
1VDV