Analysis of interatomic Contacts of Structural Units in PDB entry:
1VE2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VE2 entry

There are 2 chains in PDB entry 1VE2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 235
B
 ARG 2LYS 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 1VE2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 18Right-handed 310
Helix 2
2
A
19 29Right-handed alpha
Helix 3
3
A
39 44Right-handed alpha
Helix 4
4
A
63 77Right-handed alpha
Helix 5
5
A
94 106Right-handed alpha
Helix 6
6
A
118 125Right-handed alpha
Helix 7
7
A
167 174Right-handed alpha
Helix 8
8
A
201 203Right-handed 310
Helix 9
9
A
220 223Right-handed 310
Helix 10
10
A
224 229Right-handed alpha
Helix 11
11
B
14 18Right-handed 310
Helix 12
12
B
19 29Right-handed alpha
Helix 13
13
B
39 44Right-handed alpha
Helix 14
14
B
64 77Right-handed alpha
Helix 15
15
B
94 105Right-handed alpha
Helix 16
16
B
116 125Right-handed alpha
Helix 17
17
B
161 163Right-handed 310
Helix 18
18
B
164 174Right-handed alpha
Helix 19
19
B
201 203Right-handed 310
Helix 20
20
B
204 208Right-handed 310
Helix 21
21
B
220 223Right-handed 310
Helix 22
22
B
224 229Right-handed alpha
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There are 3 sheets in PDB entry 1VE2. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 53first strand
Strand 2
A
31 35parallel
Strand 3
A
80 85parallel
Strand 4
A
4 9parallel
Strand 5
A
109 112parallel
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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 199first strand
Strand 2
A
181 186anti-parallel
Strand 3
A
214 218anti-parallel
Strand 4
A
155 159anti-parallel
Strand 5
A
138 142parallel
Strand 6
B
137 142anti-parallel
Strand 7
B
155 159parallel
Strand 8
B
214 218anti-parallel
Strand 9
B
181 186anti-parallel
Strand 10
B
194 199anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 52first strand
Strand 2
B
31 34parallel
Strand 3
B
80 85parallel
Strand 4
B
4 9parallel
Strand 5
B
109 112parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il