Analysis of interatomic Contacts of Structural Units in PDB entry:
1VE5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VE5 entry

There are 4 chains in PDB entry 1VE5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 2PRO 311
B
 PRO 2PRO 311
C
 PRO 2PRO 311
D
 PRO 2PRO 311
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 66 helices in PDB entry 1VE5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 15Right-handed alpha
Helix 2
2
A
16 18Right-handed 310
Helix 3
3
A
26 33Right-handed alpha
Helix 4
4
A
43 49Right-handed 310
Helix 5
5
A
50 62Right-handed alpha
Helix 6
6
A
74 88Right-handed alpha
Helix 7
7
A
102 110Right-handed alpha
Helix 8
8
A
123 136Right-handed alpha
Helix 9
9
A
145 167Right-handed alpha
Helix 10
10
A
180 194Right-handed alpha
Helix 11
11
A
208 217Right-handed alpha
Helix 12
12
A
230 234Right-handed 310
Helix 13
13
A
242 250Right-handed alpha
Helix 14
14
A
257 272Right-handed alpha
Helix 15
15
A
277 280Right-handed 310
Helix 16
16
A
281 291Right-handed alpha
Helix 17
17
A
292 294Right-handed 310
Helix 18
18
B
3 15Right-handed alpha
Helix 19
19
B
16 18Right-handed 310
Helix 20
20
B
26 34Right-handed alpha
Helix 21
21
B
43 49Right-handed 310
Helix 22
22
B
50 60Right-handed alpha
Helix 23
23
B
74 88Right-handed alpha
Helix 24
24
B
103 110Right-handed alpha
Helix 25
25
B
123 136Right-handed alpha
Helix 26
26
B
145 167Right-handed alpha
Helix 27
27
B
180 194Right-handed alpha
Helix 28
28
B
208 217Right-handed alpha
Helix 29
29
B
230 234Right-handed 310
Helix 30
30
B
241 250Right-handed alpha
Helix 31
31
B
257 273Right-handed alpha
Helix 32
32
B
277 280Right-handed 310
Helix 33
33
B
281 291Right-handed alpha
Helix 34
34
B
292 294Right-handed 310
Helix 35
35
C
3 15Right-handed alpha
Helix 36
36
C
16 18Right-handed 310
Helix 37
37
C
26 34Right-handed alpha
Helix 38
38
C
43 49Right-handed 310
Helix 39
39
C
50 60Right-handed alpha
Helix 40
40
C
74 88Right-handed alpha
Helix 41
41
C
130 136Right-handed alpha
Helix 42
42
C
145 167Right-handed alpha
Helix 43
43
C
180 194Right-handed alpha
Helix 44
44
C
208 216Right-handed alpha
Helix 45
45
C
230 234Right-handed 310
Helix 46
46
C
242 250Right-handed alpha
Helix 47
47
C
257 273Right-handed alpha
Helix 48
48
C
277 280Right-handed 310
Helix 49
49
C
281 291Right-handed alpha
Helix 50
50
C
292 294Right-handed 310
Helix 51
51
D
3 15Right-handed alpha
Helix 52
52
D
16 18Right-handed 310
Helix 53
53
D
26 33Right-handed alpha
Helix 54
54
D
42 49Right-handed 310
Helix 55
55
D
50 60Right-handed alpha
Helix 56
56
D
74 88Right-handed alpha
Helix 57
57
D
128 136Right-handed alpha
Helix 58
58
D
145 167Right-handed alpha
Helix 59
59
D
180 194Right-handed alpha
Helix 60
60
D
208 217Right-handed alpha
Helix 61
61
D
230 234Right-handed 310
Helix 62
62
D
242 250Right-handed alpha
Helix 63
63
D
257 272Right-handed alpha
Helix 64
64
D
277 280Right-handed 310
Helix 65
65
D
281 291Right-handed alpha
Helix 66
66
D
292 294Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 1VE5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 25first strand
Strand 2
A
36 41anti-parallel
Strand 3
A
297 302parallel
Strand 4
A
172 176parallel
Strand 5
A
198 204parallel
Strand 6
A
252 256parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 115first strand
Strand 2
A
91 94parallel
Strand 3
A
68 71parallel
Strand 4
A
138 139parallel
Back to list of sheets
Back to top of page

There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 24first strand
Strand 2
B
36 41anti-parallel
Strand 3
B
297 302parallel
Strand 4
B
172 176parallel
Strand 5
B
198 204parallel
Strand 6
B
252 256parallel
Back to list of sheets
Back to top of page

There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 114first strand
Strand 2
B
90 93parallel
Strand 3
B
67 70parallel
Strand 4
B
138 139parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 24first strand
Strand 2
C
36 41anti-parallel
Strand 3
C
297 302parallel
Strand 4
C
172 176parallel
Strand 5
C
198 204parallel
Strand 6
C
252 256parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 92first strand
Strand 2
C
67 69parallel
Strand 3
C
138 139parallel
Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
23 25first strand
Strand 2
D
36 40anti-parallel
Strand 3
D
297 301parallel
Strand 4
D
172 176parallel
Strand 5
D
198 204parallel
Strand 6
D
252 256parallel
Back to list of sheets
Back to top of page

There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
90 94first strand
Strand 2
D
67 71parallel
Strand 3
D
138 139parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il