Analysis of interatomic Contacts of Structural Units in PDB entry:
1VEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VEF entry

There are 2 chains in PDB entry 1VEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 9ALA 395
B
 TRP 1009ALA 1395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 1VEF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 20Right-handed alpha
Helix 2
2
A
51 56Right-handed alpha
Helix 3
3
A
63 77Right-handed alpha
Helix 4
4
A
86 99Right-handed alpha
Helix 5
5
A
112 129Right-handed alpha
Helix 6
6
A
144 150Right-handed alpha
Helix 7
7
A
153 158Right-handed alpha
Helix 8
8
A
159 161Right-handed 310
Helix 9
9
A
174 182Right-handed alpha
Helix 10
10
A
204 219Right-handed alpha
Helix 11
11
A
239 244Right-handed alpha
Helix 12
12
A
253 258Right-handed 310
Helix 13
13
A
269 274Right-handed alpha
Helix 14
14
A
287 305Right-handed alpha
Helix 15
15
A
306 323Right-handed alpha
Helix 16
16
A
347 359Right-handed alpha
Helix 17
17
A
379 395Right-handed alpha
Helix 18
18
B
1009 1020Right-handed alpha
Helix 19
19
B
1051 1056Right-handed alpha
Helix 20
20
B
1063 1077Right-handed alpha
Helix 21
21
B
1086 1098Right-handed alpha
Helix 22
22
B
1112 1129Right-handed alpha
Helix 23
23
B
1144 1150Right-handed alpha
Helix 24
24
B
1153 1158Right-handed alpha
Helix 25
25
B
1159 1161Right-handed 310
Helix 26
26
B
1174 1182Right-handed alpha
Helix 27
27
B
1204 1219Right-handed alpha
Helix 28
28
B
1238 1244Right-handed alpha
Helix 29
29
B
1253 1258Right-handed 310
Helix 30
30
B
1269 1274Right-handed alpha
Helix 31
31
B
1287 1305Right-handed alpha
Helix 32
32
B
1305 1323Right-handed alpha
Helix 33
33
B
1347 1359Right-handed alpha
Helix 34
34
B
1379 1395Right-handed alpha
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There are 8 sheets in PDB entry 1VEF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 35first strand
Strand 2
A
38 41anti-parallel
Strand 3
A
46 49anti-parallel
Strand 4
A
360 361parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
104 110first strand
Strand 2
A
263 268anti-parallel
Strand 3
A
249 252anti-parallel
Strand 4
A
221 225parallel
Strand 5
A
186 191parallel
Strand 6
A
132 136parallel
Strand 7
A
167 170parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 195first strand
Strand 2
A
201 202anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 335first strand
Strand 2
A
338 343anti-parallel
Strand 3
A
369 372anti-parallel
Strand 4
A
363 364anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1031 1035first strand
Strand 2
B
1038 1041anti-parallel
Strand 3
B
1046 1049anti-parallel
Strand 4
B
1360 1361parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1104 1110first strand
Strand 2
B
1263 1268anti-parallel
Strand 3
B
1249 1252anti-parallel
Strand 4
B
1221 1225parallel
Strand 5
B
1186 1191parallel
Strand 6
B
1132 1136parallel
Strand 7
B
1167 1170parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1194 1195first strand
Strand 2
B
1201 1202anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1329 1335first strand
Strand 2
B
1338 1343anti-parallel
Strand 3
B
1369 1372anti-parallel
Strand 4
B
1363 1364anti-parallel
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