Analysis of interatomic Contacts of Structural Units in PDB entry:
1VEY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VEY entry

There are 2 chains in PDB entry 1VEY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1SER 171
B
 SER 1SER 171
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 1VEY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 15Right-handed 310
Helix 2
2
A
23 26Right-handed 310
Helix 3
3
A
27 44Right-handed alpha
Helix 4
4
A
52 55Right-handed 310
Helix 5
5
A
135 147Right-handed alpha
Helix 6
6
A
148 150Right-handed 310
Helix 7
7
A
152 156Right-handed 310
Helix 8
8
A
166 170Right-handed alpha
Helix 9
9
B
10 15Right-handed 310
Helix 10
10
B
21 27Right-handed alpha
Helix 11
11
B
27 44Right-handed alpha
Helix 12
12
B
52 55Right-handed 310
Helix 13
13
B
135 147Right-handed alpha
Helix 14
14
B
148 150Right-handed 310
Helix 15
15
B
152 157Right-handed 310
Helix 16
16
B
166 171Right-handed alpha
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There are 7 sheets in PDB entry 1VEY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
60 63anti-parallel
Strand 3
A
80 83anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
116 119anti-parallel
Strand 3
A
131 134anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 101first strand
Strand 2
A
104 114anti-parallel
Strand 3
A
163 165anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
60 63anti-parallel
Strand 3
B
81 83anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 89first strand
Strand 2
B
116 119anti-parallel
Strand 3
B
131 134anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 98first strand
Strand 2
B
110 114anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 108first strand
Strand 2
B
164 165anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il