Analysis of interatomic Contacts of Structural Units in PDB entry:
1VF8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VF8 entry

There is 1 chain in PDB entry 1VF8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 1CYS 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 1VF8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 14Right-handed 310
Helix 2
2
A
15 19Right-handed 310
Helix 3
3
A
21 25Right-handed 310
Helix 4
4
A
51 62Right-handed alpha
Helix 5
5
A
63 65Right-handed 310
Helix 6
6
A
82 90Right-handed alpha
Helix 7
7
A
91 109Right-handed alpha
Helix 8
8
A
128 153Right-handed alpha
Helix 9
9
A
166 174Right-handed alpha
Helix 10
10
A
175 183Right-handed alpha
Helix 11
11
A
195 199Right-handed 310
Helix 12
12
A
214 220Right-handed 310
Helix 13
13
A
221 232Right-handed alpha
Helix 14
14
A
235 237Right-handed 310
Helix 15
15
A
282 291Right-handed alpha
Helix 16
16
A
317 331Right-handed alpha
Helix 17
17
A
340 344Right-handed 310
Helix 18
18
A
356 366Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 1VF8. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
32 41anti-parallel
Strand 3
A
70 76parallel
Strand 4
A
113 117parallel
Strand 5
A
158 163parallel
Strand 6
A
185 188parallel
Strand 7
A
239 244parallel
Strand 8
A
335 339parallel
Strand 9
A
2 8parallel
Strand 10
A
32 41parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
246 252anti-parallel
Strand 3
A
279 281anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
264 267first strand
Strand 2
A
246 252anti-parallel
Strand 3
A
311 314anti-parallel
Strand 4
A
303 308anti-parallel
Strand 5
A
294 298anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il