Analysis of interatomic Contacts of Structural Units in PDB entry:
1VFL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VFL entry

There is 1 chain in PDB entry 1VFL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
THR 1ARG 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 1VFL. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
14 18Right-handed 310
Helix 2
2
A
20 31Right-handed alpha
Helix 3
3
A
39 48Right-handed alpha
Helix 4
4
A
54 70Right-handed alpha
Helix 5
5
A
72 90Right-handed alpha
Helix 6
6
A
101 105Right-handed 310
Helix 7
7
A
112 116Right-handed 310
Helix 8
8
A
122 142Right-handed alpha
Helix 9
9
A
155 157Right-handed 310
Helix 10
10
A
158 169Right-handed alpha
Helix 11
11
A
187 190Right-handed 310
Helix 12
12
A
191 205Right-handed alpha
Helix 13
13
A
217 227Right-handed alpha
Helix 14
14
A
237 241Right-handed 310
Helix 15
15
A
242 252Right-handed alpha
Helix 16
16
A
259 267Right-handed alpha
Helix 17
17
A
275 283Right-handed alpha
Helix 18
18
A
293 298Right-handed alpha
Helix 19
19
A
300 311Right-handed alpha
Helix 20
20
A
315 329Right-handed alpha
Helix 21
21
A
333 349Right-handed alpha
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There is 1 sheet ( A) in PDB entry 1VFL.

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
8 10first strand
Strand 2
A
92 99parallel
Strand 3
A
144 152parallel
Strand 4
A
174 180parallel
Strand 5
A
207 212parallel
Strand 6
A
232 235parallel
Strand 7
A
255 258parallel
Strand 8
A
286 289parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il