Analysis of interatomic Contacts of Structural Units in PDB entry:
1VFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VFP entry

There are 2 chains in PDB entry 1VFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 994
B
 MET 1GLY 994
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 94 helices in PDB entry 1VFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 17Right-handed alpha
Helix 2
2
A
25 37Right-handed alpha
Helix 3
3
A
50 57Right-handed alpha
Helix 4
4
A
59 78Right-handed alpha
Helix 5
5
A
84 121Right-handed alpha
Helix 6
6
A
143 145Right-handed 310
Helix 7
7
A
177 182Right-handed alpha
Helix 8
8
A
200 204Right-handed 310
Helix 9
9
A
226 229Right-handed 310
Helix 10
10
A
230 235Right-handed alpha
Helix 11
11
A
236 240Right-handed 310
Helix 12
12
A
247 274Right-handed alpha
Helix 13
13
A
275 279Right-handed 310
Helix 14
14
A
287 307Right-handed alpha
Helix 15
15
A
310 328Right-handed alpha
Helix 16
16
A
336 342Right-handed alpha
Helix 17
17
A
403 406Right-handed 310
Helix 18
18
A
407 420Right-handed alpha
Helix 19
19
A
439 453Right-handed alpha
Helix 20
20
A
463 468Right-handed alpha
Helix 21
21
A
469 478Right-handed alpha
Helix 22
22
A
505 509Right-handed 310
Helix 23
23
A
517 524Right-handed alpha
Helix 24
24
A
538 554Right-handed alpha
Helix 25
25
A
583 588Right-handed alpha
Helix 26
26
A
606 617Right-handed alpha
Helix 27
27
A
628 639Right-handed alpha
Helix 28
28
A
655 661Right-handed alpha
Helix 29
29
A
662 671Right-handed alpha
Helix 30
30
A
680 693Right-handed alpha
Helix 31
31
A
704 706Right-handed 310
Helix 32
32
A
707 714Right-handed alpha
Helix 33
33
A
724 730Right-handed alpha
Helix 34
34
A
740 769Right-handed alpha
Helix 35
35
A
774 782Right-handed alpha
Helix 36
36
A
788 800Right-handed alpha
Helix 37
37
A
801 806Right-handed alpha
Helix 38
38
A
807 810Right-handed 310
Helix 39
39
A
830 857Right-handed alpha
Helix 40
40
A
868 872Right-handed 310
Helix 41
41
A
889 892Right-handed 310
Helix 42
42
A
893 913Right-handed alpha
Helix 43
43
A
926 929Right-handed 310
Helix 44
44
A
930 950Right-handed alpha
Helix 45
45
A
951 957Right-handed alpha
Helix 46
46
A
965 974Right-handed alpha
Helix 47
47
A
976 991Right-handed alpha
Helix 48
48
B
8 17Right-handed alpha
Helix 49
49
B
25 37Right-handed alpha
Helix 50
50
B
50 57Right-handed alpha
Helix 51
51
B
59 78Right-handed alpha
Helix 52
52
B
84 121Right-handed alpha
Helix 53
53
B
143 145Right-handed 310
Helix 54
54
B
177 182Right-handed alpha
Helix 55
55
B
200 204Right-handed 310
Helix 56
56
B
226 229Right-handed 310
Helix 57
57
B
230 235Right-handed alpha
Helix 58
58
B
236 240Right-handed 310
Helix 59
59
B
247 274Right-handed alpha
Helix 60
60
B
275 279Right-handed 310
Helix 61
61
B
287 307Right-handed alpha
Helix 62
62
B
310 328Right-handed alpha
Helix 63
63
B
336 342Right-handed alpha
Helix 64
64
B
403 406Right-handed 310
Helix 65
65
B
407 420Right-handed alpha
Helix 66
66
B
439 453Right-handed alpha
Helix 67
67
B
463 468Right-handed alpha
Helix 68
68
B
469 478Right-handed alpha
Helix 69
69
B
505 509Right-handed 310
Helix 70
70
B
517 524Right-handed alpha
Helix 71
71
B
538 555Right-handed alpha
Helix 72
72
B
583 588Right-handed alpha
Helix 73
73
B
606 617Right-handed alpha
Helix 74
74
B
628 639Right-handed alpha
Helix 75
75
B
655 661Right-handed alpha
Helix 76
76
B
662 671Right-handed alpha
Helix 77
77
B
680 693Right-handed alpha
Helix 78
78
B
704 706Right-handed 310
Helix 79
79
B
707 714Right-handed alpha
Helix 80
80
B
724 730Right-handed alpha
Helix 81
81
B
740 769Right-handed alpha
Helix 82
82
B
774 782Right-handed alpha
Helix 83
83
B
788 800Right-handed alpha
Helix 84
84
B
801 806Right-handed alpha
Helix 85
85
B
807 810Right-handed 310
Helix 86
86
B
830 857Right-handed alpha
Helix 87
87
B
868 872Right-handed 310
Helix 88
88
B
889 892Right-handed 310
Helix 89
89
B
893 913Right-handed alpha
Helix 90
90
B
926 929Right-handed 310
Helix 91
91
B
930 950Right-handed alpha
Helix 92
92
B
951 957Right-handed alpha
Helix 93
93
B
965 974Right-handed alpha
Helix 94
94
B
976 991Right-handed alpha
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There are 12 sheets in PDB entry 1VFP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 141first strand
Strand 2
A
126 131anti-parallel
Strand 3
A
150 154anti-parallel
Strand 4
A
218 225anti-parallel
Strand 5
A
162 168anti-parallel
Strand 6
A
207 208anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 188first strand
Strand 2
A
174 176anti-parallel
Strand 3
A
213 214anti-parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 333first strand
Strand 2
A
733 735anti-parallel
Strand 3
A
716 720parallel
Strand 4
A
698 702parallel
Strand 5
A
347 351parallel
Strand 6
A
620 624parallel
Strand 7
A
675 677parallel
Strand 8
A
652 654parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
376 384anti-parallel
Strand 4
A
363 373anti-parallel
Strand 5
A
591 599anti-parallel
Strand 6
A
560 567anti-parallel
Strand 7
A
511 516anti-parallel
Strand 8
A
493 500anti-parallel
Strand 9
A
479 485anti-parallel
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There are 7 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
400 401first strand
Strand 2
A
395 397anti-parallel
Strand 3
A
376 384anti-parallel
Strand 4
A
363 373anti-parallel
Strand 5
A
591 599anti-parallel
Strand 6
A
525 530parallel
Strand 7
A
533 536anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 428first strand
Strand 2
A
433 437anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 141first strand
Strand 2
B
126 131anti-parallel
Strand 3
B
150 154anti-parallel
Strand 4
B
218 225anti-parallel
Strand 5
B
162 168anti-parallel
Strand 6
B
207 208anti-parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
174 176anti-parallel
Strand 3
B
213 214anti-parallel
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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 333first strand
Strand 2
B
733 735anti-parallel
Strand 3
B
716 720parallel
Strand 4
B
698 702parallel
Strand 5
B
347 351parallel
Strand 6
B
620 624parallel
Strand 7
B
675 677parallel
Strand 8
B
652 654parallel
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There are 9 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 401first strand
Strand 2
B
395 397anti-parallel
Strand 3
B
376 384anti-parallel
Strand 4
B
363 373anti-parallel
Strand 5
B
591 599anti-parallel
Strand 6
B
560 567anti-parallel
Strand 7
B
511 516anti-parallel
Strand 8
B
493 500anti-parallel
Strand 9
B
479 485anti-parallel
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There are 7 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 401first strand
Strand 2
B
395 397anti-parallel
Strand 3
B
376 384anti-parallel
Strand 4
B
363 373anti-parallel
Strand 5
B
591 599anti-parallel
Strand 6
B
525 530parallel
Strand 7
B
533 536anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 428first strand
Strand 2
B
433 437anti-parallel
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