Analysis of interatomic Contacts of Structural Units in PDB entry:
1VFU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VFU entry

There are 2 chains in PDB entry 1VFU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1ARG 585
B
MET 1ARG 585
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 1VFU. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
2 6Right-handed 310
Helix 2
2
A
104 109Right-handed alpha
Helix 3
3
A
117 121Right-handed 310
Helix 4
4
A
125 130Right-handed alpha
Helix 5
5
A
137 142Right-handed alpha
Helix 6
6
A
171 178Right-handed alpha
Helix 7
7
A
178 186Right-handed alpha
Helix 8
8
A
214 217Right-handed 310
Helix 9
9
A
218 231Right-handed alpha
Helix 10
10
A
249 258Right-handed alpha
Helix 11
11
A
259 262Right-handed 310
Helix 12
12
A
264 268Right-handed 310
Helix 13
13
A
300 317Right-handed alpha
Helix 14
14
A
326 330Right-handed 310
Helix 15
15
A
331 345Right-handed alpha
Helix 16
16
A
359 363Right-handed 310
Helix 17
17
A
373 385Right-handed alpha
Helix 18
18
A
390 403Right-handed alpha
Helix 19
19
A
406 411Right-handed alpha
Helix 20
20
A
424 429Right-handed alpha
Helix 21
21
A
432 444Right-handed alpha
Helix 22
22
A
455 459Right-handed 310
Helix 23
23
A
475 479Right-handed 310
Helix 24
24
A
480 497Right-handed alpha
Helix 25
25
A
497 503Right-handed alpha
Helix 26
26
B
2 6Right-handed 310
Helix 27
27
B
105 109Right-handed 310
Helix 28
28
B
117 121Right-handed 310
Helix 29
29
B
126 131Right-handed 310
Helix 30
30
B
137 142Right-handed alpha
Helix 31
31
B
171 186Right-handed alpha
Helix 32
32
B
213 217Right-handed 310
Helix 33
33
B
218 231Right-handed alpha
Helix 34
34
B
249 257Right-handed alpha
Helix 35
35
B
300 318Right-handed alpha
Helix 36
36
B
326 330Right-handed 310
Helix 37
37
B
331 346Right-handed alpha
Helix 38
38
B
373 384Right-handed alpha
Helix 39
39
B
390 403Right-handed alpha
Helix 40
40
B
406 413Right-handed alpha
Helix 41
41
B
424 429Right-handed alpha
Helix 42
42
B
432 444Right-handed alpha
Helix 43
43
B
455 459Right-handed 310
Helix 44
44
B
480 497Right-handed alpha
Helix 45
45
B
497 503Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 1VFU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
15 17first strand
Strand 2
A
22 30anti-parallel
Strand 3
A
66 74anti-parallel
Strand 4
A
58 62anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
36 42first strand
Strand 2
A
80 87anti-parallel
Strand 3
A
95 97anti-parallel
Strand 4
A
100 102anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
36 42first strand
Strand 2
A
80 87anti-parallel
Strand 3
A
111 113anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
370 371first strand
Strand 2
A
350 353parallel
Strand 3
A
321 324parallel
Strand 4
A
235 240parallel
Strand 5
A
189 192parallel
Strand 6
A
133 136parallel
Strand 7
A
449 453parallel
Strand 8
A
414 416parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
196 197first strand
Strand 2
A
208 212anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
507 511first strand
Strand 2
A
516 522anti-parallel
Strand 3
A
527 533anti-parallel
Strand 4
A
578 582anti-parallel
Strand 5
A
552 555anti-parallel
Strand 6
A
561 563anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
539 544first strand
Strand 2
A
568 573anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
15 17first strand
Strand 2
B
22 30anti-parallel
Strand 3
B
66 74anti-parallel
Strand 4
B
53 62anti-parallel
Strand 5
B
36 42anti-parallel
Strand 6
B
80 87anti-parallel
Strand 7
B
93 96anti-parallel
Strand 8
B
101 102anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
15 17first strand
Strand 2
B
22 30anti-parallel
Strand 3
B
66 74anti-parallel
Strand 4
B
53 62anti-parallel
Strand 5
B
36 42anti-parallel
Strand 6
B
80 87anti-parallel
Strand 7
B
111 113anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
370 371first strand
Strand 2
B
350 353parallel
Strand 3
B
321 325parallel
Strand 4
B
235 241parallel
Strand 5
B
189 192parallel
Strand 6
B
133 136parallel
Strand 7
B
449 453parallel
Strand 8
B
414 415parallel
Back to list of sheets
Back to top of page

There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
507 511first strand
Strand 2
B
516 523anti-parallel
Strand 3
B
526 533anti-parallel
Strand 4
B
579 582anti-parallel
Strand 5
B
552 555anti-parallel
Strand 6
B
561 563anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
539 544first strand
Strand 2
B
568 573anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il