Analysis of interatomic Contacts of Structural Units in PDB entry:
1VFZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VFZ entry

There is 1 chain in PDB entry 1VFZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4GLN 353
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 1VFZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 22Right-handed alpha
Helix 2
2
A
69 87Right-handed alpha
Helix 3
3
A
102 108Right-handed alpha
Helix 4
4
A
117 131Right-handed alpha
Helix 5
5
A
188 205Right-handed alpha
Helix 6
6
A
206 210Right-handed 310
Helix 7
7
A
251 256Right-handed 310
Helix 8
8
A
264 291Right-handed alpha
Helix 9
9
A
305 308Right-handed 310
Helix 10
10
A
309 315Right-handed alpha
Helix 11
11
A
316 320Right-handed 310
Helix 12
12
A
334 336Right-handed 310
Helix 13
13
A
337 351Right-handed alpha
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There are 4 sheets in PDB entry 1VFZ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
6 12parallel
Strand 3
A
324 331parallel
Strand 4
A
91 97parallel
Strand 5
A
237 248parallel
Strand 6
A
218 230anti-parallel
Strand 7
A
138 150anti-parallel
Strand 8
A
153 156anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
6 12parallel
Strand 3
A
324 331parallel
Strand 4
A
91 97parallel
Strand 5
A
237 248parallel
Strand 6
A
218 230anti-parallel
Strand 7
A
138 150anti-parallel
Strand 8
A
184 185anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 31first strand
Strand 2
A
34 37anti-parallel
Strand 3
A
48 51anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 171first strand
Strand 2
A
175 178anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il