Analysis of interatomic Contacts of Structural Units in PDB entry:
1VG0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VG0 entry

There are 2 chains in PDB entry 1VG0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3PRO 606
B
 LYS 6LEU 192
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 1VG0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 30Right-handed alpha
Helix 2
2
A
44 47Right-handed 310
Helix 3
3
A
51 62Right-handed alpha
Helix 4
4
A
63 63Right-handed 310
Helix 5
5
A
74 79Right-handed 310
Helix 6
6
A
213 220Right-handed alpha
Helix 7
7
A
221 224Right-handed 310
Helix 8
8
A
237 247Right-handed alpha
Helix 9
9
A
248 252Right-handed 310
Helix 10
10
A
274 281Right-handed alpha
Helix 11
11
A
285 301Right-handed alpha
Helix 12
12
A
302 304Right-handed 310
Helix 13
13
A
305 311Right-handed alpha
Helix 14
14
A
316 322Right-handed alpha
Helix 15
15
A
327 338Right-handed alpha
Helix 16
16
A
347 362Right-handed alpha
Helix 17
17
A
378 391Right-handed alpha
Helix 18
18
A
434 436Right-handed 310
Helix 19
19
A
490 494Right-handed 310
Helix 20
20
A
512 525Right-handed alpha
Helix 21
21
A
558 562Right-handed 310
Helix 22
22
A
581 596Right-handed alpha
Helix 23
23
B
20 31Right-handed alpha
Helix 24
24
B
74 79Right-handed alpha
Helix 25
25
B
92 98Right-handed alpha
Helix 26
26
B
98 111Right-handed alpha
Helix 27
27
B
114 118Right-handed 310
Helix 28
28
B
135 145Right-handed alpha
Helix 29
29
B
161 184Right-handed alpha
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There are 6 sheets in PDB entry 1VG0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 396first strand
Strand 2
A
34 37parallel
Strand 3
A
11 14parallel
Strand 4
A
428 432parallel
Strand 5
A
569 572parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
226 227anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 87first strand
Strand 2
A
401 407anti-parallel
Strand 3
A
413 418anti-parallel
Strand 4
A
423 425anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 102first strand
Strand 2
A
543 553anti-parallel
Strand 3
A
447 456anti-parallel
Strand 4
A
501 508anti-parallel
Strand 5
A
484 489anti-parallel
Strand 6
A
470 474anti-parallel
Strand 7
A
259 263parallel
Strand 8
A
268 270anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
370 373anti-parallel
Strand 3
A
254 256anti-parallel
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There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 52first strand
Strand 2
B
55 62anti-parallel
Strand 3
B
8 14parallel
Strand 4
B
83 89parallel
Strand 5
B
120 125parallel
Strand 6
B
151 154parallel
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