Analysis of interatomic Contacts of Structural Units in PDB entry:
1VG8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 1VG8 entry

There are 4 chains in PDB entry 1VG8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 1007ILE 1190
B
 LYS 2006ASN 2184
C
 VAL 3007ASN 3184
D
 VAL 4007ILE 4190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 1VG8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1020 1031Right-handed alpha
Helix 2
2
A
1067 1071Right-handed 310
Helix 3
3
A
1075 1079Right-handed 310
Helix 4
4
A
1092 1098Right-handed alpha
Helix 5
5
A
1098 1111Right-handed alpha
Helix 6
6
A
1114 1118Right-handed 310
Helix 7
7
A
1135 1146Right-handed alpha
Helix 8
8
A
1161 1186Right-handed alpha
Helix 9
9
B
2020 2031Right-handed alpha
Helix 10
10
B
2067 2071Right-handed 310
Helix 11
11
B
2075 2079Right-handed 310
Helix 12
12
B
2092 2098Right-handed alpha
Helix 13
13
B
2098 2111Right-handed alpha
Helix 14
14
B
2114 2118Right-handed 310
Helix 15
15
B
2135 2146Right-handed alpha
Helix 16
16
B
2161 2184Right-handed alpha
Helix 17
17
C
3020 3031Right-handed alpha
Helix 18
18
C
3067 3071Right-handed 310
Helix 19
19
C
3075 3079Right-handed 310
Helix 20
20
C
3092 3098Right-handed alpha
Helix 21
21
C
3098 3111Right-handed alpha
Helix 22
22
C
3114 3118Right-handed 310
Helix 23
23
C
3135 3146Right-handed alpha
Helix 24
24
C
3161 3184Right-handed alpha
Helix 25
25
D
4020 4031Right-handed alpha
Helix 26
26
D
4067 4071Right-handed 310
Helix 27
27
D
4075 4079Right-handed 310
Helix 28
28
D
4092 4098Right-handed alpha
Helix 29
29
D
4098 4111Right-handed alpha
Helix 30
30
D
4114 4118Right-handed 310
Helix 31
31
D
4135 4146Right-handed alpha
Helix 32
32
D
4161 4186Right-handed alpha
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There are 4 sheets in PDB entry 1VG8. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1043 1051first strand
Strand 2
A
1056 1064anti-parallel
Strand 3
A
1008 1014parallel
Strand 4
A
1083 1089parallel
Strand 5
A
1120 1125parallel
Strand 6
A
1151 1153parallel
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There are 6 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2044 2051first strand
Strand 2
B
2056 2063anti-parallel
Strand 3
B
2008 2015parallel
Strand 4
B
2083 2089parallel
Strand 5
B
2120 2125parallel
Strand 6
B
2151 2154parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3044 3052first strand
Strand 2
C
3055 3063anti-parallel
Strand 3
C
3008 3015parallel
Strand 4
C
3083 3089parallel
Strand 5
C
3120 3125parallel
Strand 6
C
3151 3153parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4043 4051first strand
Strand 2
D
4056 4064anti-parallel
Strand 3
D
4008 4014parallel
Strand 4
D
4083 4089parallel
Strand 5
D
4120 4125parallel
Strand 6
D
4151 4154parallel
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